Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01342 ATGGCTGCTTCTTCCTCCGATCCTCCTTCACGACACCACACTTACGACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAACAAAGATGATGTTCGTTTAATCGGTCTCGACGATGCTGCCGCCAAATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAAAGCATCGGGGTTCTTGCAAGAAAAGCCAAGAATCAGTATACCTGGAAAGGTTTTGCGGCAATTCCTGTTGCTTTACAGGAGCTTAAGGAAGAGGGTTTATGGCAGAATCTCAATTCTTCACAAGAAGGTGCCAATGAAGATGTGAAGGTATCGGATGAAGAGGATGAGGATGAATTGTTATCCCAAACCACTGGAAGTCAGGGTGAATCATTATCCCAACCCACTGGAAGTCAGAATGACAATCTCAACCCTAATTCCGCTTTTCCCAGATCTTTGAAAAATGACAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGTTCCAACCTGGAAATGATATCCCTTGATGATGCAGCAAGGTTGTTGCTTGGAGATGCTTATAATTCATCAACAATGAGAATCCCATCTGGCCTTGCAGCAAAAGTCAGGCGCCTTTATGATATTGCAAACGTGCTAACCTCCATGAACCTTATTGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATTGAATGAGGCATCACTTTACAATTCAAAACAAAATGAGTCTAGGAAAAGGGCGTTTGGAAATGATGTCACAAACATAAGCTTTGCCAGGAATAGAACGGACTTGTTCACGGGTGGGGACTTTAAGAAGCAAAAGACAATGGAAAATGATAGTGGGCTATGTCAGGAAGATGTGAAACAAGGCATAAAACAGACTTCAGCTAACTATCAATTTGGTCCTTTTGCTCCTGCCTTTGTATCCAAAGCTGGAAGCTCTGAGAATAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTACTGAACATTGCCCTCAGTATCAAAACCAAGCTTTGAAAGAACTTTACTCTCATTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAGAGGTCAACGCAAGTTTTGTAG 1173 0.428 MAASSSDPPSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNSAFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRIPSGLAAKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRTDLFTGGDFKKQKTMENDSGLCQEDVKQGIKQTSANYQFGPFAPAFVSKAGSSENKVKQVHDWESLATEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01342 390 PANTHER TRANSCRIPTION FACTOR E2F 9 358 IPR015633 GO:0000978|GO:0006357
Mepo1g01342 390 FunFam E2F transcription factor-like E2FE 156 249 - -
Mepo1g01342 390 Gene3D - 156 249 IPR036388 -
Mepo1g01342 390 Gene3D - 12 84 IPR036388 -
Mepo1g01342 390 SMART E2F_TDP_2 161 247 IPR003316 GO:0005667|GO:0006355
Mepo1g01342 390 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Mepo1g01342 390 FunFam E2F transcription factor 8 12 84 - -
Mepo1g01342 390 MobiDBLite consensus disorder prediction 104 156 - -
Mepo1g01342 390 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Mepo1g01342 390 MobiDBLite consensus disorder prediction 126 155 - -
Mepo1g01342 390 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
Mepo1g01342 390 Pfam E2F/DP family winged-helix DNA-binding domain 163 247 IPR003316 GO:0005667|GO:0006355
Mepo1g01342 390 SUPERFAMILY "Winged helix" DNA-binding domain 163 248 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01342 Mepo-Chr1 13273688 13277392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01342 12 382 E2F-DP Transcription Factor Family AT3G48160 54.188 1.89e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mepo1g01342 E2F_TDP 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01342 K09391 - gmx:100795252 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01342 1 13273688 13277392 Mepo1g01342 1 13273688 13277392 ECH