Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01336 ATGGGTCGTGCAAAAATACCTATGAAATACATCCAAAGTGCGAAATCTCGCAAAATAACTTTTAAACAAAGAAAGCAAGGATTACAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGAGCAAAGGCTTGCTTTATTGTGTATGATGGTGATCATACTAATGTTGAACCAATGACATGGCCAGAAGACCTTACAATTGTAAACTCCTTGCTTCAAGAGTATCAGAATCAAAAGATTGAGAAAACTCCTAAGATATTTGATGTCAAGGACTACTTTGAAAATAAGAAAGAAAAGGTTGTAACAAAGATTAACAAAGTGCGGAAAGATATACTCAGTAACATCTATCCAACTTGGCATCCACAATTTAGTAACTTGGATGAGAATCAACTCAGAGACTTCATTGCTACCATAAATGCTAAGATTCAAGCTTGCAATCACAAAATTAGCATGTTGAAAAATATGCAACAAATTGAAACTAGCACCTTGGATATATGTGAGATGATTGATTTTTCTGATCTTGGTGATTTTCCTCCTAGTTCACCACCAAACCAACTTAGTGGGCTTGTGGAGATGAATGACCAAGTTGTTAATTCTGATTATACAAGTGAGATGATGGATTTCACTAGTCTTGGTGATTTGCCTAGTTCATCATCAAACCAACTTAGTGGGCTTGTGGAGGGGAATGACCAAGTTGTTAATCCTGATTATATGAGTGAGATGGTGGATTTCACTAGTCTTGGTGATTTGCCTCCAAGTTTATCATCAAACCAACTTACTCAACATGTTGATCTTGATGATTGGATAAATCAACTAGATGATGGTGTTTTGTGCTGGGATTGTCAACCTGATCAGTTTGTTTGGAGAGATCTTTCTTTTTAA 879 0.3561 MGRAKIPMKYIQSAKSRKITFKQRKQGLQKKISEFCKKSGAKACFIVYDGDHTNVEPMTWPEDLTIVNSLLQEYQNQKIEKTPKIFDVKDYFENKKEKVVTKINKVRKDILSNIYPTWHPQFSNLDENQLRDFIATINAKIQACNHKISMLKNMQQIETSTLDICEMIDFSDLGDFPPSSPPNQLSGLVEMNDQVVNSDYTSEMMDFTSLGDLPSSSSNQLSGLVEGNDQVVNPDYMSEMVDFTSLGDLPPSLSSNQLTQHVDLDDWINQLDDGVLCWDCQPDQFVWRDLSF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01336 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Mepo1g01336 292 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mepo1g01336 292 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Mepo1g01336 292 Gene3D - 14 101 IPR036879 GO:0003677|GO:0046983
Mepo1g01336 292 CDD MADS_SRF_like 2 63 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo1g01336 292 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01336 Mepo-Chr1 13196343 13197221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01336 1 212 Type I MADS-box Gene Family AT5G55690 27.854 2.57e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g01336 SRF-TF 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01336 - - mtr:25493777 460.685