Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01254 ATGGGGAGAGTTAAATTGAAGATAAAGAAATTGGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGAGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAGTTATCAATTCTATGTGATATAGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACGTTATTACAAGGAGAACGAAGCAATATGGAGGAGATCGTTGCAAAATTTGCCCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCACTGAAAAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTTATCGGTTCAAACAGTCAAACGGTGGAGGACCTAAGTCATCAAGTGAGAGTTTTACAAGCTCGACTCACAGAAATACAACAGAGACTGAGTTATTGGAGTAATCTGGAGAAGATCAATAACTTGGAACATCTTAGACAAATGGAAGACTCGCTCAGGGAATCAATCAATCGATTGTCTATACAAAAGGAAAATCTTGAAAAGCACCAACTAATGTCACTTGAATGCGTTAACCAGTTACCAGAAGGGATGACTTTACCCTTAATGATGTCTGGTCTACAAGAATCTCAACCCTTGTCTTGGCTTCTAAATGGTGATAATCACCAGTTGATGTTACCTAGTGAACCAAAGTTTATGTCATTCAGTGACAATAGCAATAGAAATGTTGAGTGCTCAACCGACATTTCACTCCCAAGCTATTCTGGTTATACTGGGAACTGCAAACTGGAGGTGGGAAGCTCTCCACATGTCACTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTAAATGGAAATTCAAATCCTTACTTAAATGTGCAACAGTGTCAGCAGTTTGCATACCCTCCTCCACAAGATCTTGAGGAAGTGAAACATCACCAAGCAATCAATAGCAAATCAAATAACGTGGACTACCAAGTTAATAACAATTATGATCTGTCAAAATCACTAATCGAAAATGGACACCAGTTCTGGAATTCTACAAATGGCTCTTGTGGTATTGCTATGTATAACGAGAACGGTTACCATAGGTAA 1071 0.3894 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNMEEIVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFIGSNSQTVEDLSHQVRVLQARLTEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRLSIQKENLEKHQLMSLECVNQLPEGMTLPLMMSGLQESQPLSWLLNGDNHQLMLPSEPKFMSFSDNSNRNVECSTDISLPSYSGYTGNCKLEVGSSPHVTTLGQGGGTLNELNGNSNPYLNVQQCQQFAYPPPQDLEEVKHHQAINSKSNNVDYQVNNNYDLSKSLIENGHQFWNSTNGSCGIAMYNENGYHR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01254 356 Coils Coil 77 97 - -
Mepo1g01254 356 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g01254 356 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mepo1g01254 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g01254 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g01254 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g01254 356 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mepo1g01254 356 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mepo1g01254 356 Coils Coil 114 134 - -
Mepo1g01254 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 213 - -
Mepo1g01254 356 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Mepo1g01254 356 Coils Coil 147 174 - -
Mepo1g01254 356 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo1g01254 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01254 Mepo-Chr1 12319710 12323226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01254 1 276 Type I MADS-box Gene Family AT2G03060 51.579 5.47e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g01254 SRF-TF 8.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01254 - - pvu:PHAVU_003G189100g 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01254 1 12319710 12323226 Mepo1g01254 1 12319710 12323226 ECH