Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01233 ATGTCTGACGAAGAGCACCAGTTTGAATCCAAGGCTGATGCTGGTGCATCCAAAACTTATCCTCAACAAGCTGGTACCATTCGTAAGAATGGATACATCGTTATCAAAAACCGTCCCTGCAAGGTTGTTGAAGTTTCAACTTCCAAGACTGGAAAGCACGGACATGCTAAGTGTCATTTTGTTGCTATTGATATCTTTACTTCAAAGAAACTTGAAGATATTGTGCCGTCTTCACATAATTGTGATGTTCCTCACGTGAATCGTACCGATTATCAGCTCATTGACATTTCTGAAGATGGATTTGTGAGCTTGCTTACTGAAAATGGAAACACTAAGGATGACCTCAAACTTCCCACCGATGACAGTCTGCTCACTCAGATCAAGGATGGATTTGGTGAGGGAAAGGACCTTGTTGTATCTGTGATGTCTGCTATGGGTGAGGAGCAGATCTGTGCTTTGAAGGATATTGGTGGAAAGAACTAA 483 0.4203 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGGKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01233 160 FunFam Eukaryotic translation initiation factor 5A 86 157 - -
Mepo1g01233 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Mepo1g01233 160 CDD S1_eIF5A 86 156 - -
Mepo1g01233 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Mepo1g01233 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Mepo1g01233 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Mepo1g01233 160 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g01233 160 Gene3D - 86 160 IPR012340 -
Mepo1g01233 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Mepo1g01233 160 Gene3D - 1 85 IPR014722 -
Mepo1g01233 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Mepo1g01233 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 159 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Mepo1g01233 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Mepo1g01233 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01233 Mepo-Chr1 12079520 12081768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01233 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 91.195 1.36e-104 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01233 K03263 K02180 ini:109166094 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01233 1 12079520 12081768 Mepo1g01233 1 12079520 12081768 ECH