Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01208 ATGTTTATGGTTTTCTTCAGGTTACAAGTTACAGCAATGGCTTTCTTTGGTAAACTTGGGAATATTCTACGACAAGGGGTAAACCGGAAGATTGTTTCGGAATTGCGTCCAGCCCCATCTGCTCTCCAGGCTGTAAGATGCATGTGTTCTGCTCCAACCACAAAGCTGTTTATAGGGGGTATTTCATATTCAACTGATGAACCAAGTTTGAGGGAAGCTTTTTCAAGATATGGTGAAGTTCTTGACGCAAGGATAATTATGGATCGTGAAAGTGGTAGATCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTTATGGTCGTCGGGTTAGGGTAAATTACGCTAATGAAAGGCCCCGTGCATATGGCGACGGCGGCGGTTCTTATGGTAATGCAACATACGGTGGTGGAGCTGGGTATGCAGGTGCTTATGGTGGCTCTCCATACGGTGGTGCTTCAAGTGGCGGTGGCTATGGTGGAAATGTAGATGGAGGTTATGGGGGTGGCGGCTATGGTGGAGGTAGCTCTGGGCCAGGTGCCAATTATGGGGGTAGTAACTATTCTGCTCCTAACAGTTTTGGAACTAACAATGCTGGTAGCGGCATTGGCTCTGCTGGTGGATATGATGGAAGTGGGGGGATGGAATATGGCGGCCGTGGCCAATTTGATAGCAAAGACGGTGGTAATGTAAATGAGGACTTGGGAGGTGACGGAGACTCGATCCATGGAAATTTTGGCGATGGTGATGATGTCGAGGACTCAATCAATGACAATGATGATACTGATGATTTTGCTAAAAGGGCCTGA 852 0.4718 MFMVFFRLQVTAMAFFGKLGNILRQGVNRKIVSELRPAPSALQAVRCMCSAPTTKLFIGGISYSTDEPSLREAFSRYGEVLDARIIMDRESGRSRGFGFITFNSVEEASSAIQALDGQDLYGRRVRVNYANERPRAYGDGGGSYGNATYGGGAGYAGAYGGSPYGGASSGGGYGGNVDGGYGGGGYGGGSSGPGANYGGSNYSAPNSFGTNNAGSGIGSAGGYDGSGGMEYGGRGQFDSKDGGNVNEDLGGDGDSIHGNFGDGDDVEDSINDNDDTDDFAKRA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01208 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Mepo1g01208 283 SMART rrm1_1 55 128 IPR000504 GO:0003723
Mepo1g01208 283 Gene3D - 33 150 IPR012677 -
Mepo1g01208 283 PRINTS Eggshell protein signature 138 153 - -
Mepo1g01208 283 PRINTS Eggshell protein signature 50 66 - -
Mepo1g01208 283 PRINTS Eggshell protein signature 214 232 - -
Mepo1g01208 283 PRINTS Eggshell protein signature 164 174 - -
Mepo1g01208 283 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 24 155 - -
Mepo1g01208 283 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 215 - -
Mepo1g01208 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 126 IPR000504 GO:0003723
Mepo1g01208 283 MobiDBLite consensus disorder prediction 225 283 - -
Mepo1g01208 283 CDD RRM2_NsCP33_like 55 130 - -
Mepo1g01208 283 SUPERFAMILY RNA-binding domain, RBD 51 161 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01208 Mepo-Chr1 11826922 11831536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01208 56 134 C2H2 Transcription Factor Family AT2G19380 32.911 2.25e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01208 K12741 - gmx:100799124 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01208 1 11826922 11831536 Mepo1g01208 1 11826922 11831536 ECH