Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01190 ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAAGAATTGGGTTTTGGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAATGAGTATTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCTGTTGTGGAATCTAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGATGATCATGGTAATGCTTCAAATTCAATTGATGTGGCATTTTCCAAAGGAGCAGCATCTATTTTGTCTTCTAGTGAATCTTCAACACCTCCCAAGAGAGTGAGAATGCATTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAGGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCGTTCACTCTGCAAATTCTGCGAGACTGTTTCAGCCATTTGGTGATATCAGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTGCCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAACCAGAACATGAAGCTGGCTTTAGGCATCTTTCTTCTGTTCCTTTTACCAGTGAAAATCTTCAATCAAGATCTTCGTTTCCTTCATACAGCGAAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTGCAGGCAGTAAGTTTGGTGAAAACAATAGCCATTATGCGCATGCCATTGGCTACACCTCATTAGGAAGTGAAGACTTCAATGTTTTTCATACAGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAATAACACTTCAAGCCAGTCCTCGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAGGCGACTTCCTCAAGCCGAGTGTCTGATAGATTTTTATCCGAATTAAATCCTGCAGATGGAAGTCATCTCAGTCCTATATTGGTATCAGACAATAATGATATCGTGAATTTTGAAATGGAAGATGGGATCTTCCATGATTCAGATTTTATGAATGCTAAAGACTGTCTTTCGTGTGAAGAGGATGCAACCATTGACTTACTACAACTGTCGTCGCAGCTACAGCGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTCCGGATTACTTAA 1422 0.398 MESWSYISEEKGSEEELGFGEMFGKQYSDDFNFIGSVPSKKLDGKFDDPNEYSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASNSIDVAFSKGAASILSSSESSTPPKRVRMHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGVHSANSARLFQPFGDIRFQGTKPPAASFLCPEVFQSGFWRPMKPEHEAGFRHLSSVPFTSENLQSRSSFPSYSEKQFPFLHENVATSTAGSKFGENNSHYAHAIGYTSLGSEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSSEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRFLSELNPADGSHLSPILVSDNNDIVNFEMEDGIFHDSDFMNAKDCLSCEEDATIDLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01190 473 Gene3D - 122 187 IPR036893 GO:0003677|GO:0005634
Mepo1g01190 473 Pfam SBP domain 126 199 IPR004333 GO:0003677
Mepo1g01190 473 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 72 458 IPR044817 GO:0003677
Mepo1g01190 473 ProSiteProfiles Zinc finger SBP-type profile. 123 200 IPR004333 GO:0003677
Mepo1g01190 473 FunFam Squamosa promoter-binding-like protein 14 117 187 - -
Mepo1g01190 473 SUPERFAMILY SBT domain 124 201 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01190 Mepo-Chr1 11666197 11670196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01190 76 200 SBP-box Gene Family AT1G69170 64.062 7.93e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo1g01190 SBP 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01190 - - gmx:100817547 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01190 1 11666197 11670196 Mepo1g01190 1 11666197 11670196 ECH