Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01187 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATAGACAAGTCACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACAAGAGATCTCTGTACTTTGTGATGCTGAAGTTGCTCTCATTATTTTCTCTACTAAAGGCAAGCTTTTTGAATACTCCAGCGATCCTTGTATGGAAAAAATTCTTGAGCGATACGAGAGATGTTCGTATATGGAGAGGCAGCTTGTTACAAGTGAGCAGTCACCAAATGAAAATTGGGCTCTAGAGCACGCAAAACTCAAGGCTAGGATGGAAGTACTTCAGAGAAATCAAAGGAATTTTATGGGAGAGGACTTGGATGGTTTAAGTCTCAAAGAGCTTCAGAGTTTGGAACAACAACTTGATTCCTCTCTCAAACAAATTAGATCACGGAAGAACCAAGTTATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCCCTTCAAGAACATAACAACTTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGAACTTGCTCAAGAGGAGCTGCAAAATAGTGTGGAGGTGACTCCAATTGAAACTCAACCATTGGAATCCATGAATACTACAGGATCAGGGTCCCTACAAGCGAATTGCAATGAAGAAGCAGCAGCACAAACAAGAGGTGGTGCAATTCTTCCTCCTTGGATGATTCGTCCTATAAATGAATAG 714 0.4062 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEYSSDPCMEKILERYERCSYMERQLVTSEQSPNENWALEHAKLKARMEVLQRNQRNFMGEDLDGLSLKELQSLEQQLDSSLKQIRSRKNQVMYESISELQKKDKALQEHNNLLAKKIKEKEKELAQEELQNSVEVTPIETQPLESMNTTGSGSLQANCNEEAAAQTRGGAILPPWMIRPINE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01187 237 Coils Coil 122 145 - -
Mepo1g01187 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mepo1g01187 237 Coils Coil 88 108 - -
Mepo1g01187 237 Coils Coil 154 190 - -
Mepo1g01187 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Mepo1g01187 237 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mepo1g01187 237 Pfam K-box region 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01187 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01187 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mepo1g01187 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo1g01187 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Mepo1g01187 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01187 Mepo-Chr1 11608771 11614088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01187 1 199 MADS-box Gene Family AT1G26310 62.621 6.25e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo1g01187 K-box 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01187 K09264 K09260 gmx:100805348 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01187 1 11608771 11614088 Mepo6g02405 6 32928830 32939944 PCT