Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo1g01176 | ATGTCGACCTCGTTGCCTACATCAAATAAACGCCTCAAATCCGAAGTGAAAATTGAAGAAGAAGACGACAATGACAATAACCAAGATGTTTGCTGCGGAATTTGTTACATCGAACGCGGAATTTCAGTCCCTGCGGAAATCGATTGCTGCAACCATTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACATGAATCTCGATGCCCACTATGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTATGCATGATGTCTTTTCTTCCTCTCGGGATGTTAAGATTCCTATTCGTGATCAGGTTTACCATCCTCATGGAAATATGACAAGTGGTCCTGTTGATTCTAATGCTGAACGCAAGTGTTGTATTTGCGATGGTGCGAAAGATGAAAACCTTATACTAATATGTGATCTTTGTGATACTGTTTCACATACGTTTTGTGTTGGATTGGGCTACACCGTTCCTGAAGGCGATTGGTTTTGTCATGATTGTGCTGTTTCCCTGGAGACTAATGCTAATTATATGTTGGACCAACAAAATGTTGAGCTAAAAGCGGCGCCTGATGTAACCATCTTAAATATTGTGAGAGGAACAGGCAGCCAAGTGGTTAGAAGACCAATGGCATCTCCTATACGACAAAACAATTCTTTGTCTTCTGATATTCCTTTACTTGATAGGGTGAGCAGATCCGAAGGTAAGAAACCTGTGTCGGAAGTCCAGCGTGCCCTGCATAATGTTCAACTGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGGTTCCATAGCAAAACATTTCAATCTGGCGGTGCAAGCAGTCAAACAGAAAATTCTAGTTCTTTATCATGTGGCAAATTAGATGATTCACATTCAATGGCTTCCGCAAGCAGTCAACAATCCACAGTCCAAGGTGCTCAATCCAGTAACATGTTGAGTAATGGTGGCTTGAAAGATGATGTTGACAAAGCTTGGCAAATGATGCGTAAGGCAAAGACGATGCAACAAACTCCTAGAAGAACAAGCAGAATTCAACAGGAAGTGGATGATGGTCCCTCATGCAGTGGTGCTAGAGAAAAATCATTTTCACCTCGTAGTGGCCTTGAATTGAAAAAACAACAACCCAGAACATTAAACTTTATGTACACCAAAATGCAGGAGAAGTGTGACTACTCTTGTCTCAAAAAAAATTTGGAAAATCATCGGTCTCCGATGTTGGCAGAGAAAAGGCAAAGTAGGGTCTTGTGTGAGGAGAAGATACAACATTTGAGAAACCATAATACTCATTTAGAAGGATACAGGGAATGTCCATTGCCCAGTAAGGTCCATACTAGTACCCACAGAGCTCCCTGTCACAATGAAAGAAATGCGGCGAAGGAACAAAGGCAGTCTGCTTACTTGGTAACTTCAGTAGGTTCAGCACCCTCAAGTGGAAAATCTGGCAGCATGTTCACCTCTAATAAGGATGTGGATATTTTCAATAAAGAAAAAAGGTTGGCTAAAAGCTTCGGGAATGGAATCACAAAAAATACCGAAGATGCAAAAACAGAGATCCAGTCTCTTGTTAAACTAAATTTGAATTGCTTAGCTATCAATAAACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCCATTCCGAGCAGCAAAAGTCTAATATATACTCCTCGAACTCAGTATGCAGCCATACTTACCATAATCTTCAGTTTCAGAAGTCTAATTTAATGCCCAATTGTTGCCGGCAATGCTTTCATGTCTTTGTGAACGATGTTGTCAAGTCGGTGTTGGAAAAGGTGGGCTGTTCTTGA | 1845 | 0.4125 | MSTSLPTSNKRLKSEVKIEEEDDNDNNQDVCCGICYIERGISVPAEIDCCNHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMHDVFSSSRDVKIPIRDQVYHPHGNMTSGPVDSNAERKCCICDGAKDENLILICDLCDTVSHTFCVGLGYTVPEGDWFCHDCAVSLETNANYMLDQQNVELKAAPDVTILNIVRGTGSQVVRRPMASPIRQNNSLSSDIPLLDRVSRSEGKKPVSEVQRALHNVQLLRENWNSLRSGKLRFHSKTFQSGGASSQTENSSSLSCGKLDDSHSMASASSQQSTVQGAQSSNMLSNGGLKDDVDKAWQMMRKAKTMQQTPRRTSRIQQEVDDGPSCSGAREKSFSPRSGLELKKQQPRTLNFMYTKMQEKCDYSCLKKNLENHRSPMLAEKRQSRVLCEEKIQHLRNHNTHLEGYRECPLPSKVHTSTHRAPCHNERNAAKEQRQSAYLVTSVGSAPSSGKSGSMFTSNKDVDIFNKEKRLAKSFGNGITKNTEDAKTEIQSLVKLNLNCLAINKQLGVETFKVVARQATHTILAACHSEQQKSNIYSSNSVCSHTYHNLQFQKSNLMPNCCRQCFHVFVNDVVKSVLEKVGCS | 614 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo1g01176 | 614 | PANTHER | F18C1.6 PROTEIN | 13 | 610 | - | - | |
Mepo1g01176 | 614 | SMART | ring_2 | 32 | 72 | IPR001841 | - | |
Mepo1g01176 | 614 | MobiDBLite | consensus disorder prediction | 268 | 320 | - | - | |
Mepo1g01176 | 614 | ProSiteProfiles | Zinc finger PHD-type profile. | 119 | 168 | IPR019787 | - | |
Mepo1g01176 | 614 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 96 | IPR013083 | - | |
Mepo1g01176 | 614 | Pfam | Ring finger domain | 32 | 73 | IPR001841 | - | |
Mepo1g01176 | 614 | SUPERFAMILY | RING/U-box | 23 | 79 | - | - | |
Mepo1g01176 | 614 | SMART | PHD_3 | 121 | 166 | IPR001965 | - | |
Mepo1g01176 | 614 | SUPERFAMILY | FYVE/PHD zinc finger | 114 | 167 | IPR011011 | - | |
Mepo1g01176 | 614 | ProSiteProfiles | Zinc finger RING-type profile. | 32 | 73 | IPR001841 | - | |
Mepo1g01176 | 614 | MobiDBLite | consensus disorder prediction | 333 | 371 | - | - | |
Mepo1g01176 | 614 | Pfam | PHD-finger | 122 | 166 | IPR019787 | - | |
Mepo1g01176 | 614 | ProSitePatterns | Zinc finger RING-type signature. | 50 | 59 | IPR017907 | - | |
Mepo1g01176 | 614 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 176 | IPR013083 | - | |
Mepo1g01176 | 614 | MobiDBLite | consensus disorder prediction | 268 | 317 | - | - | |
Mepo1g01176 | 614 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo1g01176 | Mepo-Chr1 | 11465306 | 11468611 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo1g01176 | 91 | 168 | C2H2 Transcription Factor Family | AT3G01460 | 31.646 | 1.35e-06 | 50.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Mepo1g01176 | PHD | 8.2e-08 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo1g01176 | - | - | tpra:123885278 | 844.728 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Mepo1g01176 | 1 | 11465306 | 11468611 | Mepo1g01176 | 1 | 11465306 | 11468611 | ECH |