Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01176 ATGTCGACCTCGTTGCCTACATCAAATAAACGCCTCAAATCCGAAGTGAAAATTGAAGAAGAAGACGACAATGACAATAACCAAGATGTTTGCTGCGGAATTTGTTACATCGAACGCGGAATTTCAGTCCCTGCGGAAATCGATTGCTGCAACCATTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACATGAATCTCGATGCCCACTATGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTATGCATGATGTCTTTTCTTCCTCTCGGGATGTTAAGATTCCTATTCGTGATCAGGTTTACCATCCTCATGGAAATATGACAAGTGGTCCTGTTGATTCTAATGCTGAACGCAAGTGTTGTATTTGCGATGGTGCGAAAGATGAAAACCTTATACTAATATGTGATCTTTGTGATACTGTTTCACATACGTTTTGTGTTGGATTGGGCTACACCGTTCCTGAAGGCGATTGGTTTTGTCATGATTGTGCTGTTTCCCTGGAGACTAATGCTAATTATATGTTGGACCAACAAAATGTTGAGCTAAAAGCGGCGCCTGATGTAACCATCTTAAATATTGTGAGAGGAACAGGCAGCCAAGTGGTTAGAAGACCAATGGCATCTCCTATACGACAAAACAATTCTTTGTCTTCTGATATTCCTTTACTTGATAGGGTGAGCAGATCCGAAGGTAAGAAACCTGTGTCGGAAGTCCAGCGTGCCCTGCATAATGTTCAACTGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGGTTCCATAGCAAAACATTTCAATCTGGCGGTGCAAGCAGTCAAACAGAAAATTCTAGTTCTTTATCATGTGGCAAATTAGATGATTCACATTCAATGGCTTCCGCAAGCAGTCAACAATCCACAGTCCAAGGTGCTCAATCCAGTAACATGTTGAGTAATGGTGGCTTGAAAGATGATGTTGACAAAGCTTGGCAAATGATGCGTAAGGCAAAGACGATGCAACAAACTCCTAGAAGAACAAGCAGAATTCAACAGGAAGTGGATGATGGTCCCTCATGCAGTGGTGCTAGAGAAAAATCATTTTCACCTCGTAGTGGCCTTGAATTGAAAAAACAACAACCCAGAACATTAAACTTTATGTACACCAAAATGCAGGAGAAGTGTGACTACTCTTGTCTCAAAAAAAATTTGGAAAATCATCGGTCTCCGATGTTGGCAGAGAAAAGGCAAAGTAGGGTCTTGTGTGAGGAGAAGATACAACATTTGAGAAACCATAATACTCATTTAGAAGGATACAGGGAATGTCCATTGCCCAGTAAGGTCCATACTAGTACCCACAGAGCTCCCTGTCACAATGAAAGAAATGCGGCGAAGGAACAAAGGCAGTCTGCTTACTTGGTAACTTCAGTAGGTTCAGCACCCTCAAGTGGAAAATCTGGCAGCATGTTCACCTCTAATAAGGATGTGGATATTTTCAATAAAGAAAAAAGGTTGGCTAAAAGCTTCGGGAATGGAATCACAAAAAATACCGAAGATGCAAAAACAGAGATCCAGTCTCTTGTTAAACTAAATTTGAATTGCTTAGCTATCAATAAACAATTAGGTGTCGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCCATTCCGAGCAGCAAAAGTCTAATATATACTCCTCGAACTCAGTATGCAGCCATACTTACCATAATCTTCAGTTTCAGAAGTCTAATTTAATGCCCAATTGTTGCCGGCAATGCTTTCATGTCTTTGTGAACGATGTTGTCAAGTCGGTGTTGGAAAAGGTGGGCTGTTCTTGA 1845 0.4125 MSTSLPTSNKRLKSEVKIEEEDDNDNNQDVCCGICYIERGISVPAEIDCCNHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMHDVFSSSRDVKIPIRDQVYHPHGNMTSGPVDSNAERKCCICDGAKDENLILICDLCDTVSHTFCVGLGYTVPEGDWFCHDCAVSLETNANYMLDQQNVELKAAPDVTILNIVRGTGSQVVRRPMASPIRQNNSLSSDIPLLDRVSRSEGKKPVSEVQRALHNVQLLRENWNSLRSGKLRFHSKTFQSGGASSQTENSSSLSCGKLDDSHSMASASSQQSTVQGAQSSNMLSNGGLKDDVDKAWQMMRKAKTMQQTPRRTSRIQQEVDDGPSCSGAREKSFSPRSGLELKKQQPRTLNFMYTKMQEKCDYSCLKKNLENHRSPMLAEKRQSRVLCEEKIQHLRNHNTHLEGYRECPLPSKVHTSTHRAPCHNERNAAKEQRQSAYLVTSVGSAPSSGKSGSMFTSNKDVDIFNKEKRLAKSFGNGITKNTEDAKTEIQSLVKLNLNCLAINKQLGVETFKVVARQATHTILAACHSEQQKSNIYSSNSVCSHTYHNLQFQKSNLMPNCCRQCFHVFVNDVVKSVLEKVGCS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01176 614 PANTHER F18C1.6 PROTEIN 13 610 - -
Mepo1g01176 614 SMART ring_2 32 72 IPR001841 -
Mepo1g01176 614 MobiDBLite consensus disorder prediction 268 320 - -
Mepo1g01176 614 ProSiteProfiles Zinc finger PHD-type profile. 119 168 IPR019787 -
Mepo1g01176 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 96 IPR013083 -
Mepo1g01176 614 Pfam Ring finger domain 32 73 IPR001841 -
Mepo1g01176 614 SUPERFAMILY RING/U-box 23 79 - -
Mepo1g01176 614 SMART PHD_3 121 166 IPR001965 -
Mepo1g01176 614 SUPERFAMILY FYVE/PHD zinc finger 114 167 IPR011011 -
Mepo1g01176 614 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Mepo1g01176 614 MobiDBLite consensus disorder prediction 333 371 - -
Mepo1g01176 614 Pfam PHD-finger 122 166 IPR019787 -
Mepo1g01176 614 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mepo1g01176 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 176 IPR013083 -
Mepo1g01176 614 MobiDBLite consensus disorder prediction 268 317 - -
Mepo1g01176 614 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01176 Mepo-Chr1 11465306 11468611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01176 91 168 C2H2 Transcription Factor Family AT3G01460 31.646 1.35e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo1g01176 PHD 8.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01176 - - tpra:123885278 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01176 1 11465306 11468611 Mepo1g01176 1 11465306 11468611 ECH