Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01175 ATGGCTGATGTAACCTATCTCCGTCGTCACCACCACCACGAACCCGACGATGACCAAACCCTAATCCCTTTACCTTATTGGCCTTCCACTTCCGATCTCGACTTTGATTTCGATCTTTACTCTTCCGATCCTGAATTCCCATCCAATCACAACCACCGCTTTTCTCGCGAGAATTTCGTCATGGATCTCTTCCAACAACGCGTTGAACAATCTCAAATTACTAATCACACCGATCCAATTCATCAATCGTTAAACGACTCCGTTTTCGACAGTTTAAGTTTCGATTTAGGGTTCAATCCTTCCGACCTTCATCTCGATCTCAATATCGCCGCTGAAGAAGACGACGATGATTTTCCTGATATAACGATTTCTAGATCTGATCCAATTAACGGTTTACCTATTGTTGAGATTGATTCGGATTCTGAATGTGAAGAAGTTGATGGAAATGGAAACGGAGACAACGTGTTTTGTGGAATCTGTATGCATTCTGATGCTGATGAAGATGATTTTAGCAATGTAATTGAGGAAGAAGAAATTGGGAGTTTTCCTCTTCGTTGGGATTCGCTTCATTTGGAGGATGATCCTCAAATTTACGAGGATTTTGAGTGGGAGGAAGTTGATGGTGGTGGCTTTGATGATAGGGAAATTCTTGGTTTGATGTTTGCTGGTGATGATGACGATAACAATAACAATAACAATAGGTCTGTTAATGCTGGTCGTGCTCGCGGTACTTTGTTTATTGAACAAGAAGAAGAAGAACACGAGGAAGAAGATGGGGAAGAGGTTACTATGTTGAGGGTTGATGGAGAAGAGGTTAATATGATGAGGGTTGGTGGAGGAACGGAGAATCTTGATTGGCAAGTTTTGTTGAATTCCGCGAGTCCTGAAACTTATCATGTGATTTCAGAGCCTGATTTTGGGGATAATGATGATTACATTTACACTGCGGAGTATGAGATGATGTTTGGTCAATTCGCGGATAATGTGAATTCGTTTACCAGTAAGCCACCGGCTTCCGTAGCGTTTGTTGAGAATATTCTGTCAGTGGTTGTGACTAAAGAGGACGTGGATAACAATAATGCGCTGTGTGCGGTTTGTAAAGATGAATTTGCTGTTGCAGAAGAGGTGAAGTTGTTGCCGTGTTCTCATCGATATCATGGTGATTGCATAATGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGCTGTGAGTTTCCTACTGATGATGCTGATTATGAACGTAGGAAAGCTCCAATGTTGGCTCGGAGCGCTTGA 1281 0.4231 MADVTYLRRHHHHEPDDDQTLIPLPYWPSTSDLDFDFDLYSSDPEFPSNHNHRFSRENFVMDLFQQRVEQSQITNHTDPIHQSLNDSVFDSLSFDLGFNPSDLHLDLNIAAEEDDDDFPDITISRSDPINGLPIVEIDSDSECEEVDGNGNGDNVFCGICMHSDADEDDFSNVIEEEEIGSFPLRWDSLHLEDDPQIYEDFEWEEVDGGGFDDREILGLMFAGDDDDNNNNNNRSVNAGRARGTLFIEQEEEEHEEEDGEEVTMLRVDGEEVNMMRVGGGTENLDWQVLLNSASPETYHVISEPDFGDNDDYIYTAEYEMMFGQFADNVNSFTSKPPASVAFVENILSVVVTKEDVDNNNALCAVCKDEFAVAEEVKLLPCSHRYHGDCIMPWLGIRNTCPVCRCEFPTDDADYERRKAPMLARSA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01175 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 410 IPR013083 -
Mepo1g01175 426 SUPERFAMILY RING/U-box 345 410 - -
Mepo1g01175 426 SMART ring_2 363 403 IPR001841 -
Mepo1g01175 426 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Mepo1g01175 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 248 408 - -
Mepo1g01175 426 FunFam E3 ubiquitin-protein ligase RNF181 326 410 - -
Mepo1g01175 426 Pfam Ring finger domain 363 404 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01175 Mepo-Chr1 11455558 11456838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01175 8 410 C3H Transcription Factor Family AT5G60820 33.560 4.58e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01175 - - mtr:25493924 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01175 1 11455558 11456838 Mepo1g01175 1 11455558 11456838 ECH