Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01149 ATGGAAAACACAGACACCTTAAAAATTCCACACCAAATTCATCAAACTTACAAAAACAATAATATTTCTTTGATCCCTCATGAAATAGGCAAACCCTACGAGAACAAAGAAAGGAACACTATTAAGAAGATTCCAAAAACATCAAACAAGGGTCATCAGAAAAAGTATCTAGGAGTGAGACAAAGGCCTTCAGGAAGATGGATAGCTGAGATCAAAGACTCATCACAGAAACTAAGACTATGGTTAGGTACTTTTGATAGAGCAGAAGATGCTGCTCTGTCTTATGATTCTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACTAACTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGGAAGAATCCTAGAGCTTTTCAGCTTCTTAAGCATGCAATGATGAAGAACCATGCAGTTTCTTCATCATCATCTGTTTATTCCACTGTCATGATGCCATGGAAAAATGATCAACTTGATGCGATTGTTGAGGAAACTATAGTTTGTTCTATTCCTGATGATGAAGGTTCTACAGCTGCAGGGTGTGGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAGTGCTTCTTAA 624 0.3702 MENTDTLKIPHQIHQTYKNNNISLIPHEIGKPYENKERNTIKKIPKTSNKGHQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALSYDSAARLLRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAMMKNHAVSSSSSVYSTVMMPWKNDQLDAIVEETIVCSIPDDEGSTAAGCGGISFGSSKVYSSVVVAPSFSAS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01149 207 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 46 149 - -
Mepo1g01149 207 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Mepo1g01149 207 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Mepo1g01149 207 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Mepo1g01149 207 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01149 Mepo-Chr1 11261889 11262512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01149 36 113 AP2-EREBP Transcription Factor Family AT5G19790 57.692 2.36e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g01149 AP2 1.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01149 - K09286 gmx:100807374 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01149 1 11261889 11262512 Mepo1g01149 1 11261889 11262512 ECH