Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01117 ATGAGCTGGAGCAGGGTGTTGAAATCAGCGCAAGCCTTTGCTGCCCACACCTTTCTCCTCTGTTTCACTCTTTTGCTCCTTCTCAAGCTTGATCATCGCATCTCTTCCTCTTGGTGGATAATTTTTGCACCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCCGCGCCATCAGCTCCACGTAATCGACATTGGGCGCCATGTCACGCTGTTGTTGCAATGCCATTACTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTAGATCTGAAGATTGTGTTCCTTCCTTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAAAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAACTGAGTGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTATTTATTAACTTCGCCATTGCCGAGTGCTTTGCATTTCTTGTATGTACGAAGTGGTCCAATCCTGTCATTCATAGAAGTTCCAGAGAACCCAGTTCTTCTACTACTACTATTAGATATCTTGACTGGAACAGTGGTTTACTGGTTTCTTCAGAAGAAGATCAACGTCAGGCGGGAATGTGTAGCCTCCAAGACATAGGGGGTCATTTCATGAAAGTACCGGTCATTGTTTTCCAGGTTCTTCTTTGCATGCATTTAGAGGGAACACCTGCTTTTGCTGCACATTTACCTCTTGCAGTTCTTTTCTCTCCCCTTTTCGTACTGCAAGGTGTTGGTGTGCTATTATCTGCATCTAAGTTTGCGGAGAAACTTGTGCTTCTTCTACGAAGCGGAGCTGGTAGAGGACTTTATTTTAGATTCTCTTCCAGAGCTCATGACTGCTTGGGGTTCTTGCACCATGGTTCTAGATTACTAGGCTGGTGGTCAATTGATGAAGGTAGTCGGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCTGGGTATAATACATTCAGTGGTTACCCTCCTGAGATTGTTAAGAAAATGCCTAAAAGGGATCTTGCTGAGGAGGTATGGAGACTCCAGGCAGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTTGAGGGAGAGATTAGTGTTGTATTACTCCCATGTAGACATCGTGTCCTTTGCAACTTCTGCTCGGAGAAGTGTAAGGCGTGCCCAATTTGCCGCAACTATATTGCAGAGCGCTTGCCTGTATATGATGTCTAA 1398 0.4413 MSWSRVLKSAQAFAAHTFLLCFTLLLLLKLDHRISSSWWIIFAPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVAMPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGSVASLGWWDLFINFAIAECFAFLVCTKWSNPVIHRSSREPSSSTTTIRYLDWNSGLLVSSEEDQRQAGMCSLQDIGGHFMKVPVIVFQVLLCMHLEGTPAFAAHLPLAVLFSPLFVLQGVGVLLSASKFAEKLVLLLRSGAGRGLYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCNFCSEKCKACPICRNYIAERLPVYDV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01117 465 ProSiteProfiles Zinc finger RING-type profile. 418 453 IPR001841 -
Mepo1g01117 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 463 IPR013083 -
Mepo1g01117 465 FunFam Kinesin-like protein KIN-7D, mitochondrial 395 463 - -
Mepo1g01117 465 Pfam Zinc finger, C3HC4 type (RING finger) 415 457 - -
Mepo1g01117 465 SMART ring_2 418 452 IPR001841 -
Mepo1g01117 465 Pfam Transmembrane Fragile-X-F protein 28 290 IPR019396 -
Mepo1g01117 465 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 465 - -
Mepo1g01117 465 SUPERFAMILY RING/U-box 410 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01117 Mepo-Chr1 10856751 10864544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01117 1 465 C3H Transcription Factor Family AT1G73950 72.688 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01117 - - tpra:123921257 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01117 1 10856751 10864544 Mepo1g01117 1 10856751 10864544 ECH