Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo1g01070 | ATGGTTTTTCCTGACAATATTCCAACCTCTAAGATGTCACCGCCGCAATTCGCTACATCAAACAGCGATATCATTGAAGTGAAACCTCGATTTCCAATGAAAAATGAAAACTTTGAACAACATTCAACATTGTATCAACCCCATTCCTTCAAAAGGGCAAGACTTTCTGATAACAATCGTTCCAATGCATTGATATGCCCTCCTCCAAGGATGGTTCTACCTCCATTAAACAGAGCAGACCACATTTTCTACAAAACACGAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAATGGTAAAGATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGACAGCCACCACGAAATTGGGAGGAAGATCAAAAAATCATTCACAAGATGAAGCTATGCAGGATGTATTCCAATGGTGAGAAATGTTTCTTAGGTAGTAAGTGTTATTTTCTTCATGAGGATCCTGCTAAGTTTAGGGTTCATTCTTGGAAGTCAAGAGAGTGTTCTTCTGTAAGCATTGGGACTATTGGTTCTTCAAAATCATTTGGGGATGGCATTAGGGCTGTGGACAAGCCAGCTAGGGGCAATTATTGGAAGACTAAGAAGTGTTTCGGTTGGCAGCATCAAGGGAACTGTCCCTTTGGGGAGGACTGTCACTTTGCTCATGGAGAAGCAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCATTCCAACTTCACGAAAAGCCTTAACAGGTTCTGCTAATGATGCATATGCATCTACCACCTTCTATGCAAGTCTACTTGTGGCAAAGGAAGAGGAGCAGGCTAAGAAGATGCATTCACTTTGGTTGAAATTAAACAAGATCAATCGTGTTTATGGTGATTGGATTGATGATTCACCTCTTGTTCTTCCCAACTTGCCAAGTGCAGTGGAGAACTGA | 924 | 0.4091 | MVFPDNIPTSKMSPPQFATSNSDIIEVKPRFPMKNENFEQHSTLYQPHSFKRARLSDNNRSNALICPPPRMVLPPLNRADHIFYKTRICTKFRFGACRNGKDCNFAHGVEELRQPPRNWEEDQKIIHKMKLCRMYSNGEKCFLGSKCYFLHEDPAKFRVHSWKSRECSSVSIGTIGSSKSFGDGIRAVDKPARGNYWKTKKCFGWQHQGNCPFGEDCHFAHGEAAAVAIANSTKAIIPTSRKALTGSANDAYASTTFYASLLVAKEEEQAKKMHSLWLKLNKINRVYGDWIDDSPLVLPNLPSAVEN | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo1g01070 | 307 | ProSiteProfiles | Zinc finger C3H1-type profile. | 196 | 224 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | Pfam | RNA-binding, Nab2-type zinc finger | 132 | 151 | - | - | |
Mepo1g01070 | 307 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 197 | 223 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 84 | 108 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 50 | 156 | IPR045877 | GO:0003729 | |
Mepo1g01070 | 307 | ProSiteProfiles | Zinc finger C3H1-type profile. | 83 | 110 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | SMART | c3hfinal6 | 83 | 109 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | SMART | c3hfinal6 | 126 | 153 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | SMART | c3hfinal6 | 196 | 223 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | FunFam | Zinc finger CCCH domain-containing protein | 79 | 115 | - | - | |
Mepo1g01070 | 307 | Gene3D | - | 80 | 168 | - | - | |
Mepo1g01070 | 307 | SUPERFAMILY | CCCH zinc finger | 80 | 114 | IPR036855 | GO:0046872 | |
Mepo1g01070 | 307 | ProSiteProfiles | Zinc finger C3H1-type profile. | 126 | 154 | IPR000571 | GO:0046872 | |
Mepo1g01070 | 307 | Gene3D | - | 191 | 225 | - | - | |
Mepo1g01070 | 307 | SUPERFAMILY | CCCH zinc finger | 126 | 153 | IPR036855 | GO:0046872 | |
Mepo1g01070 | 307 | SUPERFAMILY | CCCH zinc finger | 196 | 224 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo1g01070 | Mepo-Chr1 | 10296934 | 10299373 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo1g01070 | 85 | 151 | C3H Transcription Factor Family | AT1G68200 | 38.235 | 3.44e-07 | 48.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Mepo1g01070 | zf-CCCH | 0.0002 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo1g01070 | - | - | tpra:123881739 | 347.821 |