Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01070 ATGGTTTTTCCTGACAATATTCCAACCTCTAAGATGTCACCGCCGCAATTCGCTACATCAAACAGCGATATCATTGAAGTGAAACCTCGATTTCCAATGAAAAATGAAAACTTTGAACAACATTCAACATTGTATCAACCCCATTCCTTCAAAAGGGCAAGACTTTCTGATAACAATCGTTCCAATGCATTGATATGCCCTCCTCCAAGGATGGTTCTACCTCCATTAAACAGAGCAGACCACATTTTCTACAAAACACGAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAATGGTAAAGATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGACAGCCACCACGAAATTGGGAGGAAGATCAAAAAATCATTCACAAGATGAAGCTATGCAGGATGTATTCCAATGGTGAGAAATGTTTCTTAGGTAGTAAGTGTTATTTTCTTCATGAGGATCCTGCTAAGTTTAGGGTTCATTCTTGGAAGTCAAGAGAGTGTTCTTCTGTAAGCATTGGGACTATTGGTTCTTCAAAATCATTTGGGGATGGCATTAGGGCTGTGGACAAGCCAGCTAGGGGCAATTATTGGAAGACTAAGAAGTGTTTCGGTTGGCAGCATCAAGGGAACTGTCCCTTTGGGGAGGACTGTCACTTTGCTCATGGAGAAGCAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCATTCCAACTTCACGAAAAGCCTTAACAGGTTCTGCTAATGATGCATATGCATCTACCACCTTCTATGCAAGTCTACTTGTGGCAAAGGAAGAGGAGCAGGCTAAGAAGATGCATTCACTTTGGTTGAAATTAAACAAGATCAATCGTGTTTATGGTGATTGGATTGATGATTCACCTCTTGTTCTTCCCAACTTGCCAAGTGCAGTGGAGAACTGA 924 0.4091 MVFPDNIPTSKMSPPQFATSNSDIIEVKPRFPMKNENFEQHSTLYQPHSFKRARLSDNNRSNALICPPPRMVLPPLNRADHIFYKTRICTKFRFGACRNGKDCNFAHGVEELRQPPRNWEEDQKIIHKMKLCRMYSNGEKCFLGSKCYFLHEDPAKFRVHSWKSRECSSVSIGTIGSSKSFGDGIRAVDKPARGNYWKTKKCFGWQHQGNCPFGEDCHFAHGEAAAVAIANSTKAIIPTSRKALTGSANDAYASTTFYASLLVAKEEEQAKKMHSLWLKLNKINRVYGDWIDDSPLVLPNLPSAVEN 307
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01070 307 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Mepo1g01070 307 Pfam RNA-binding, Nab2-type zinc finger 132 151 - -
Mepo1g01070 307 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 197 223 IPR000571 GO:0046872
Mepo1g01070 307 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Mepo1g01070 307 PANTHER CCCH ZINC FINGER/TIS11-RELATED 50 156 IPR045877 GO:0003729
Mepo1g01070 307 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Mepo1g01070 307 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Mepo1g01070 307 SMART c3hfinal6 126 153 IPR000571 GO:0046872
Mepo1g01070 307 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Mepo1g01070 307 FunFam Zinc finger CCCH domain-containing protein 79 115 - -
Mepo1g01070 307 Gene3D - 80 168 - -
Mepo1g01070 307 SUPERFAMILY CCCH zinc finger 80 114 IPR036855 GO:0046872
Mepo1g01070 307 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
Mepo1g01070 307 Gene3D - 191 225 - -
Mepo1g01070 307 SUPERFAMILY CCCH zinc finger 126 153 IPR036855 GO:0046872
Mepo1g01070 307 SUPERFAMILY CCCH zinc finger 196 224 IPR036855 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo1g01070 Mepo-Chr1 10296934 10299373 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01070 85 151 C3H Transcription Factor Family AT1G68200 38.235 3.44e-07 48.9
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g01070 zf-CCCH 0.0002 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01070 - - tpra:123881739 347.821