Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01069 ATGAATCTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCCTATGGAGATAAGTGTAAATTCCTTCATGAAGATCCTGCACAGTTTAGGGGCACTTATCGGAAGACTAAGCTGTGTCTCAAGTGGAAGGATACAGGATATTGTTCCTTTGGAAAGAACTGCACTTTACTCATGGTGAAGAAGTTACAAGTTCCTGGTGGGGCCATTGAAGCTGAAGCTGAAGCTGCAGTAATTACCATAGCAAAGGAAGAGGAGCTGGCAAAGAAGAAACACATACTTGGGTTGAAATTCAGCAAGATCAATCGTATTTACGGTGATTGGGTTGATGATTGA 333 0.4234 MNLCKKYCNGEECPYGDKCKFLHEDPAQFRGTYRKTKLCLKWKDTGYCSFGKNCTLLMVKKLQVPGGAIEAEAEAAVITIAKEEELAKKKHILGLKFSKINRIYGDWVDD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01069 110 Gene3D - 1 64 - -
Mepo1g01069 110 SUPERFAMILY CCCH zinc finger 32 55 IPR036855 GO:0046872
Mepo1g01069 110 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Mepo1g01069 110 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Mepo1g01069 110 SMART c3hfinal6 33 56 IPR000571 GO:0046872
Mepo1g01069 110 SUPERFAMILY CCCH zinc finger 2 25 IPR036855 GO:0046872
Mepo1g01069 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 54 IPR000571 GO:0046872
Mepo1g01069 110 ProSiteProfiles Zinc finger C3H1-type profile. 1 26 IPR000571 GO:0046872
Mepo1g01069 110 Pfam CCCH-type zinc finger 3 23 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01069 Mepo-Chr1 10279283 10280722 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g01069 zf-CCCH 0.00018 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01069 - - mtr:11438765 184.111