LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g01055	ATGGCAGCAGCAGCAGCATGGTCTGATTCAACTACTCAAAAACAAAATCGTCCCTCTCAACAACTTTACGTTCCACAATTCCGTTCAAACCCAAACAACATTCATCCTTCACCTTATTACAACAACAATCGAACCCATTTTCCATCCAACGATGCACCTCACTACAACACTTTCAATCGCCCCACTCCTAGACCAACACGTGGCAGAGGCGGTTACGGTTTTCCTCACACCCATGCTCCGCCACGTCATTACTCTCGTCCCGAACAATATCAACCACGCTACTACGATCCTTCTCAAAACCGCTCACCGTTTGTAACAAACGGTGAAAATCTTGAAAACGCCGTCGTTGCGAATTTTGAAGCTTATGAATCGATACCGGTGGAAGCGACGGGGGAGAATGTTCCACCGCCGGTCAATCTATTTGCGGAAACGGAGCTTCATGAAGATTTGAAGAATAATATTGATAGATGTAAGTATGTGAAACCTACTCCTGTTCAGCGTTACGCGATCCCCATTGCTGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAGACTGGCTCGGGTAAAACGGCGGCGTTTTGTTTTCCGATCATATCTGGGATCATGAAACAACGTTTAGCTTCTGGTTTGTTGCCACGTGGCGGTCATGGTGGTTCCGATGCTGCTTTTCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTGTCTTGCCAGATACATGCTGAGGCGTGTAAGTTTGCACACCAAACAGGAGTGAAGATTGCGGTTGTTTATGGGGGTGCTCCTATTGGACAACAGTTGAGGATTTTGGAGAGGGGTGTTGATATTTTGGTTGCAACTCCGGGGCGTTTAGTGGATTTGATTGAGAGGGAAAGGGTTTCTTTGAAGAAGATTAAGTATCTTGCGTTGGATGAGGCTGATCGGATGCTGGACATGGGTTTTGAGCATCAGATACGTAATATTGTTCAGCAGATGCACATGCCTCCTCCTGGTGATAGACAGACGTTGCTTTTCAGTGCTACATTTCCAGATAATATACAGAAGCTTGCATCTGATTTTTTATCAAACTACGTGTTCCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAGATTGAATCTGTACAGGACATGGAGAAAAGAAATCGTCTTGTGGATCTTCTTCGACGTAATGTAGTCAATGGGAAGCTTGCCTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAAACTGGTTGTGCAGAAGTAACTTTCCAGCTATAGCTATACATGGTGACAAGGTTCAAATGGAGCGGGAACGAGCCTTGAGATCTTTTAAACGTGGTCTTACTCCAATAATGGTTGCAACTGATGTCGCTTCTCGAGGATTGGATATCCCTCATGTGGCTCATGTTATTAACTTTGACTTGCCAAGAGACATAGATGACTATGTACATAGAATTGGTAGGACAGGCCGTGCTGGTCAATCTGGTTTAGCAACAGCTTTCTTTAGCACCAAGAACATGCCTATGGCAAAGTCTCTTGTTGGCCTTTTACAGGAAGCTAAACAAGAAGTACCTGCATGGCTTGTCCAATATTCTGAGTGTTCAGCACCAGGTGGACGCAGCAGCGTTGGATCTCAACGGTCACCCTGGAGAGGCAATTATGGAGGCCGCGATTTTCGGAATGCTACGGAACCTGGAATGGTGGAGAATTATAACTACAACAGTAATTACAGCAATTATGGTGATAATGGATTCCACAATGTTCCAGAACAGGTGCAGAATTACAACTACAACGGCACCTACAATAATGGAGACCATCCTGCCAACTCATATACTGATGCCTCTTTAGATGTCTCAAACTCTAACAATGATTGCTCTTTTGATAACACTAATACAGTGGTTGCTGGTGGTTACAATTGCACTGATGCTGGTTTATTAGAAGGTAGTGATGGTACAAATGGGCCATGTGGTTATGCATCCGTTGTGCCCACTGGATGGGATTAA	2013	0.4471	MAAAAAWSDSTTQKQNRPSQQLYVPQFRSNPNNIHPSPYYNNNRTHFPSNDAPHYNTFNRPTPRPTRGRGGYGFPHTHAPPRHYSRPEQYQPRYYDPSQNRSPFVTNGENLENAVVANFEAYESIPVEATGENVPPPVNLFAETELHEDLKNNIDRCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKQRLASGLLPRGGHGGSDAAFPTALILSPTRELSCQIHAEACKFAHQTGVKIAVVYGGAPIGQQLRILERGVDILVATPGRLVDLIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKIESVQDMEKRNRLVDLLRRNVVNGKLALTLVFVETKKGADALENWLCRSNFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSTKNMPMAKSLVGLLQEAKQEVPAWLVQYSECSAPGGRSSVGSQRSPWRGNYGGRDFRNATEPGMVENYNYNSNYSNYGDNGFHNVPEQVQNYNYNGTYNNGDHPANSYTDASLDVSNSNNDCSFDNTNTVVAGGYNCTDAGLLEGSDGTNGPCGYASVVPTGWD	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g01055	670	MobiDBLite	consensus disorder prediction	1	101	-	-
	Mepo1g01055	670	FunFam	ATP-dependent RNA helicase RhlB	363	538	-	-
	Mepo1g01055	670	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	139	167	IPR014014	GO:0003724
	Mepo1g01055	670	Pfam	Helicase conserved C-terminal domain	384	496	IPR001650	-
	Mepo1g01055	670	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	111	533	-	-
	Mepo1g01055	670	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	170	360	IPR014001	-
	Mepo1g01055	670	SMART	ultradead3	158	375	IPR014001	-
	Mepo1g01055	670	Gene3D	-	99	362	IPR027417	-
	Mepo1g01055	670	CDD	DEADc_DDX3_DDX4	141	366	IPR044763	GO:0003724\|GO:0005524
	Mepo1g01055	670	MobiDBLite	consensus disorder prediction	1	63	-	-
	Mepo1g01055	670	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	395	535	IPR001650	-
	Mepo1g01055	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	225	513	IPR027417	-
	Mepo1g01055	670	Gene3D	-	363	537	IPR027417	-
	Mepo1g01055	670	CDD	SF2_C_DEAD	372	505	-	-
	Mepo1g01055	670	FunFam	Probable ATP-dependent RNA helicase DDX4	106	362	-	-
	Mepo1g01055	670	SMART	helicmild6	415	496	IPR001650	-
	Mepo1g01055	670	Pfam	DEAD/DEAH box helicase	163	349	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g01055	Mepo-Chr1	10161680	10165180	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g01055	137	516	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.115	5.92e-59	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g01055	K11594		-	gmx:100791226	733.791