Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00883 ATGGGTGGTTCATGGAGTAATAATAACAGTAATAACAGAAACATAAGTAGAAGAAGACATAGTTACCATGAACACTATCCACCACCTCCTTACTATTATTACTCTTCTCAGCCTCAGCCTTTGATGCCACAGCCACAGCCTCCTCAAGGTTACTTTCCTCCTCCTCATCATCAATACTACTCAAATGGATACACTCCTACCAATTCCATGCTTCCTCAGCCTCACCACCCTTTCTATGCAACAACAAATACTCAACCACTTGATGTAGATGTAAATGTTGTTCAAGCACTTCCACCACCACCTCCATACACTGACCATGAAACTGCAAAGAAGGTAAGGAATGATGTGAATTTGCATAAACACACTCTGCAGCTTTACCAGGATCCCAACAATCCCGATCACCACTTGATTTCCTTTGTTTTTGATGCCCTCTTTCCTGGCAGAATTACAATCTTCTACTTAGCCAGAGAAGAAGAACATCAATGTAGGTTTGTTCCTCTATTTCCCGAAGCGTTTGAGCCAATCACGTTCCCCTTCCAGAAAGGAGTTGGACAGAAATTTTGTCAGCCATCAGGAACAGGCATAGACTTAGGTTTCTTTGAGTTGGAAGATCTTTCAAACCACTCACCTGAAGAAGATGTATTTCCCCTTGTAATATGTGCCGAAACAACCCCTTTGGCAGATCATGAAACTTCTGCTAGTTCCTTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAGAAACAGTGACACTGGTCCTTACCAGGTTAAAGTAGTTAGGCAGATTCTATGGATCGATCAAGTTCGTTATGAGCTCAGAGAGTTATATGGGATTGGTAACTCGACAGCACCTGATTTTGATCGTAATGATCCTGGAAAGGAGTGTGTAATATGCATGACAGAACCAAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGCGAGTGTGCAAAAGCTTTGCGAGTTCAATCAAACAATTGCCCTATATGCCGCCAACCAATTGAGCAACTAATAGAGATCAAGATAAACAATGATGACCAATGA 1068 0.4223 MGGSWSNNNSNNRNISRRRHSYHEHYPPPPYYYYSSQPQPLMPQPQPPQGYFPPPHHQYYSNGYTPTNSMLPQPHHPFYATTNTQPLDVDVNVVQALPPPPPYTDHETAKKVRNDVNLHKHTLQLYQDPNNPDHHLISFVFDALFPGRITIFYLAREEEHQCRFVPLFPEAFEPITFPFQKGVGQKFCQPSGTGIDLGFFELEDLSNHSPEEDVFPLVICAETTPLADHETSASSLVDASPHMQITQAVLERNSDTGPYQVKVVRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNNCPICRQPIEQLIEIKINNDDQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00883 355 PANTHER MAHOGUNIN 1 349 IPR045194 GO:0061630
Mepo1g00883 355 MobiDBLite consensus disorder prediction 60 83 - -
Mepo1g00883 355 MobiDBLite consensus disorder prediction 21 83 - -
Mepo1g00883 355 SMART ring_2 300 338 IPR001841 -
Mepo1g00883 355 MobiDBLite consensus disorder prediction 31 54 - -
Mepo1g00883 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 349 IPR013083 -
Mepo1g00883 355 ProSiteProfiles Zinc finger RING-type profile. 300 339 IPR001841 -
Mepo1g00883 355 FunFam probable E3 ubiquitin-protein ligase LOG2 284 349 - -
Mepo1g00883 355 SUPERFAMILY RING/U-box 299 345 - -
Mepo1g00883 355 CDD mRING-HC-C3HC5_MGRN1-like 298 339 IPR045195 -
Mepo1g00883 355 Pfam Zinc finger, C3HC4 type (RING finger) 298 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00883 Mepo-Chr1 8431654 8434038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00883 103 355 C3H Transcription Factor Family AT3G06140 59.449 1.69e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00883 - - psat:127073410 542.732