Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00803 ATGGCCAGAACTTCCAAATCTCACGTTTCTAGCGCCTCCAATTCATCTTCTTCCGAAGAAGAAGAGGTTGGGAACGTTAACGATCAGATCGAAGAAGAGGATGAGGAAGAACTCGAAGCCGTTGCTCGTTCCGCTGGCTCCGACGATGAAGATGCGCCAGATGAACCCGCCGCCGATGATGACGGCGTCGACGAAGAGGATGAAAATCAGGATGAAAGTGTTAATCCTGAGATTAGTAAGCGTGAGAAAGCTAGGTTAAAGGAATTGGAACGGTTGAAGAAACAGAAGGTTCAGGAGATATTGGATGCACAAAATGCATCTATTGATGCTACTATGAACACTAAAGGAAAAGGACGATTGAAGTATCTGTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCTAAAAGTGGTCAATCTTCGTCTCAGAAGAAGGCTAAGGGAAGGGGACGCCATGCATCAAAGGTGACCGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGGAGGGTTAGGAAATACACGGCTGGTTACTCAACCATCATGTATCCAAGGGAAAATGAGGGATTACCAACTTGCTGGGCTAAATTGGCTCATACGTCTGTATGAGAATGGAATAAACGGAATTTTAGCTGATGAAATGGGACTTGGCAAAACTTTACAAACTATATCTTTGCTGGGCTATCTACATGAGTTCAGAGGAATAACGGGTCCACATATGGTTGTTGCTCCAAAATCCACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCAGTTTTACGGGCAGTCAAGTTCCTCGGTAGCCCTGATGAAAGGAAACATATAAAAGAGGAGTTATTGGTGGCTGGAAAATTCGATGTGTGTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGCCCACATTCCGTCGATTTAGTTGGCGTTATGTTATTATTGATGAAGCCCATCGGATAAAAAATGAGAACTCCCTCCTGTCCAAAACAATGAGGGAATATAAAACAAACTACCGACTCCTTATAACTGGCACACCGCTACAGAACAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAAGTCCTCCGTCCATTTCTTCTTCGAAGGTTGAAATCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCTTTATTACAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCGTATCTTTTCCAAGGAGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATATCATTACCAGTGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAGCTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGGCTGCTAGATATACTTGAAGATTATTTGATGTTTCGTGGATACCAATACTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGACGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTTTTGTTGTCTACTCGAGCCGGAGGTCTTGGCATCAATCTTGCTACTGCCGATGTTGTTATTCTTTATGACAGTGACTGGAACCCACAAGCTGACTTGCAGGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTTTGCACTGAGTATACGATTGAGGAAAAAGTTATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTAATTCAGCAAGGGCGATTAGCCGAGCAGAAGACTGTTAATAAAGATGATTTGCTCCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATTGATAGAATTATCGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACCGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGATTTTGATGATGAGAAGGATGAGGACAAAGTTGATTTCAAAAAAATTGTGAGTGACAACTGGGTTGAGCCATCAAGAAGAGAAAGGAAGAGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAGGTGCTCCTACTAAACCTAAAGAACCTCGAATTCCTAGAATGCCTCAATTGCATGATTTTCAGTTCTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTATCTAATGCAAGCACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGATGAACCAGAAGAAGTGGGAGAGCCATTGACTGCTGAAGAGTCCGAAGAAAAGGAGCACCTGCTAGAGCAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACTTTCATTAGGGCATGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTTGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAATTGAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGTCTAGAATAGCTCGGAAAGACGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAGCTTGGCTATGGTAATTGGGATGAATTGAAAGCTGCATTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACTCAGGAACTAACAAGGAGATGTGACACCCTCATTCGTTTGGTAGAAAAGGAAAATCAAGAATATGATGAAAGAGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCTCCAAGAGCACAACTCCATCAAAGCGCGTCTTGCCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATTACTATGTTAGCTCGGGGAAGAGAAAAAAATAA 3192 0.4104 MARTSKSHVSSASNSSSSEEEEVGNVNDQIEEEDEEELEAVARSAGSDDEDAPDEPAADDDGVDEEDENQDESVNPEISKREKARLKELERLKKQKVQEILDAQNASIDATMNTKGKGRLKYLLQQTELFAHFAKSGQSSSQKKAKGRGRHASKVTEEEEDEEYLKEEEGGLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGSPDERKHIKEELLVAGKFDVCVTSFEMVIKEKPTFRRFSWRYVIIDEAHRIKNENSLLSKTMREYKTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHIITSAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDEDKVDFKKIVSDNWVEPSRRERKRNYSESEYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEPLTAEESEEKEHLLEQGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLASKSTTPSKRVLPRQAESPSLKKRKQLTMDYYVSSGKRKK 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00803 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 644 IPR001650 -
Mepo1g00803 1063 SMART sant 839 888 IPR001005 -
Mepo1g00803 1063 SUPERFAMILY Homeodomain-like 842 892 IPR009057 -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 1 84 - -
Mepo1g00803 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 365 IPR014001 -
Mepo1g00803 1063 FunFam ISWI chromatin-remodeling complex ATPase CHR11 927 1031 - -
Mepo1g00803 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 403 IPR027417 -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 24 39 - -
Mepo1g00803 1063 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 839 893 - -
Mepo1g00803 1063 FunFam ISWI chromatin-remodeling complex ATPase CHR11 409 701 - -
Mepo1g00803 1063 Pfam HAND 752 833 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mepo1g00803 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 684 IPR027417 -
Mepo1g00803 1063 Coils Coil 16 36 - -
Mepo1g00803 1063 Coils Coil 79 106 - -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 134 168 - -
Mepo1g00803 1063 Gene3D - 189 404 IPR038718 -
Mepo1g00803 1063 SUPERFAMILY Homeodomain-like 894 1016 IPR009057 -
Mepo1g00803 1063 SMART ultradead3 184 376 IPR014001 -
Mepo1g00803 1063 Gene3D iswi atpase 894 926 - -
Mepo1g00803 1063 CDD SANT 842 886 IPR001005 -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 1 23 - -
Mepo1g00803 1063 CDD DEXHc_SMARCA1_SMARCA5 185 405 IPR044754 GO:0005524
Mepo1g00803 1063 Pfam SLIDE 896 1006 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mepo1g00803 1063 Coils Coil 989 1023 - -
Mepo1g00803 1063 SMART helicmild6 519 603 IPR001650 -
Mepo1g00803 1063 CDD SF2_C_SNF 483 614 - -
Mepo1g00803 1063 Gene3D - 927 1030 - -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 809 832 - -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 1010 1027 - -
Mepo1g00803 1063 Pfam Helicase conserved C-terminal domain 493 603 IPR001650 -
Mepo1g00803 1063 FunFam Chromatin-remodeling complex ATPase 189 404 - -
Mepo1g00803 1063 Gene3D - 839 893 - -
Mepo1g00803 1063 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 751 841 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 51 72 - -
Mepo1g00803 1063 Gene3D - 409 701 IPR027417 -
Mepo1g00803 1063 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 94 1048 - -
Mepo1g00803 1063 MobiDBLite consensus disorder prediction 1010 1045 - -
Mepo1g00803 1063 FunFam ISWI chromatin-remodeling complex ATPase CHR11 740 838 - -
Mepo1g00803 1063 ProSiteProfiles SANT domain profile. 838 890 IPR017884 -
Mepo1g00803 1063 Gene3D ISWI, HAND domain 740 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mepo1g00803 1063 Pfam SNF2-related domain 201 468 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00803 Mepo-Chr1 7705154 7713219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00803 209 630 RAD5 or RAD16-like Gene Family AT1G02670 26.733 1.37e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo1g00803 SNF2_N 1.4e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00803 K11654 - gmx:100791510 1833.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00803 1 7705154 7713219 Mepo1g00803 1 7705154 7713219 ECH
Mepo1g00803 1 7705154 7713219 Mepo6g00748 6 7725966 7735070 PCT