Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00789 ATGGAACAAAGGTACGGCCGAGCTAACGATGGGTCGTCACAGTTGCACTCTGATCCGTCGCCGGAATGGACTTCCGTCGGTGCCGATGAAGGGTATGGTGGTGGTGAATCGTATCCACAACGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCCGGGGAATATCCAGAACGAGTTGGACAACCAGTTTGCCAGTACTATGCGAGGACGGGATCATGCAAATTTGGCGCTTCCTGCAAGTATCACCATCCTAGACAGGCGGCAGGAACTACTGCTCCTGTGTCGCTAAATTGTTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTCCATCATCCACAGCCTGCGGGTGGCCAAATGATAGCACCGTCACCAGTTCCCCAAGTTTCACCTCTGCCAATGCCGGTACCTTCACCTATTTATCAAACTGTACAGCCTCCGTCCGGTCCTTCACAACAACAATATGGTGTACTTGTTGCGAGGCCACCTCTTCTACATGGGTCATTTGTCCAGGGCCCTTATGGGCCAATGGTAATGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGATGCAGGCTCCTGCAGCAAGTCCTGTACTTCCTTCTAGTACTCAGTTGAGTGTTGGTTCAACACAGCTGTATGGGATAACTCAGCTACCTTCACCAACAACTGCCTATGCTCAGCTACCTTCACCAACAACTGTCTATACTGGACCTTACCAATCCTCTGGTCCCTCAGCTGGTCCTTTCCAATCTTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGTCCCTCAACTGGTCCTTCAGGTAGTAGTCAGAAGGAACACTCGTTACCTGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGACTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTTAGTCCTATTGGCCTTCCTTTGCGCCCGGGAGCACAACCTTGCACTCATTATACCCAGCGTGGATTTTGTAAGTTTGGATCTGCATGTAAATTCGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTTTCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCGCCATTGGTACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCGTCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCATCATCAATGAGCACATCAACTGCATCAGCTGGCTTGACTTTGTCAACGGTTGTACCGGTTTCTCAATCAGATGCCCAACCATCTTCTCAGAGTTCCGGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACCGTCTCTCACACCTCAAGCTAA 1527 0.4971 MEQRYGRANDGSSQLHSDPSPEWTSVGADEGYGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAGTTAPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPLPMPVPSPIYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSPYQMQAPAASPVLPSSTQLSVGSTQLYGITQLPSPTTAYAQLPSPTTVYTGPYQSSGPSAGPFQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGTLAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTASAGLTLSTVVPVSQSDAQPSSQSSGSLATPSATTSSTVSHTSS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00789 508 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Mepo1g00789 508 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Mepo1g00789 508 Gene3D - 39 120 - -
Mepo1g00789 508 Gene3D - 328 415 - -
Mepo1g00789 508 Gene3D - 121 168 - -
Mepo1g00789 508 MobiDBLite consensus disorder prediction 1 39 - -
Mepo1g00789 508 MobiDBLite consensus disorder prediction 431 508 - -
Mepo1g00789 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 159 IPR000571 GO:0046872
Mepo1g00789 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Mepo1g00789 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 68 IPR000571 GO:0046872
Mepo1g00789 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 378 400 IPR000571 GO:0046872
Mepo1g00789 508 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 357 IPR000571 GO:0046872
Mepo1g00789 508 ProSiteProfiles Zinc finger C3H1-type profile. 374 402 IPR000571 GO:0046872
Mepo1g00789 508 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Mepo1g00789 508 SMART c3hfinal6 134 159 IPR000571 GO:0046872
Mepo1g00789 508 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Mepo1g00789 508 SMART c3hfinal6 374 401 IPR000571 GO:0046872
Mepo1g00789 508 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Mepo1g00789 508 SUPERFAMILY CCCH zinc finger 332 358 IPR036855 GO:0046872
Mepo1g00789 508 ProSiteProfiles Zinc finger C3H1-type profile. 330 358 IPR000571 GO:0046872
Mepo1g00789 508 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g00789 508 MobiDBLite consensus disorder prediction 285 324 - -
Mepo1g00789 508 SUPERFAMILY CCCH zinc finger 377 404 IPR036855 GO:0046872
Mepo1g00789 508 SUPERFAMILY CCCH zinc finger 43 69 IPR036855 GO:0046872
Mepo1g00789 508 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
Mepo1g00789 508 MobiDBLite consensus disorder prediction 285 332 - -
Mepo1g00789 508 ProSiteProfiles Zinc finger C3H1-type profile. 41 69 IPR000571 GO:0046872
Mepo1g00789 508 PANTHER PROTEIN PHOSPHATASE RELATED 29 435 - -
Mepo1g00789 508 SUPERFAMILY CCCH zinc finger 133 160 IPR036855 GO:0046872
Mepo1g00789 508 FunFam Zinc finger nuclease 2 40 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00789 Mepo-Chr1 7543377 7547796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00789 3 470 C2H2 Transcription Factor Family AT5G18550 52.041 1.66e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g00789 zf-CCCH 5.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00789 - - mtr:11409008 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00789 1 7543377 7547796 Mepo6g00738 6 7595341 7601519 PCT