Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00777 ATGATGGATAACAACGTTGGAGGAAGTTCCTTTAGTAATGATGAAAACGGAGGCATAATAAAGGAACAAGATAGGTTGTTACCAATTGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTTTCAGAGTTTATAAGCTTTGTAACAAGTGAGGCATCAGAGAAATGCAGGAAGGAAAGAAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTGGGGACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTAGATAGAAATCCAACTCCTACTAATAATATTCAAGATAGAGGAAATTAA 390 0.359 MMDNNVGGSSFSNDENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRNPTPTNNIQDRGN 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00777 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo1g00777 129 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo1g00777 129 SUPERFAMILY Histone-fold 23 119 IPR009072 GO:0046982
Mepo1g00777 129 Gene3D Histone, subunit A 19 128 IPR009072 GO:0046982
Mepo1g00777 129 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Mepo1g00777 129 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Mepo1g00777 129 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Mepo1g00777 129 FunFam Nuclear transcription factor Y subunit B-3 15 129 - -
Mepo1g00777 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00777 Mepo-Chr1 7382946 7383562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00777 15 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.490 1.83e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo1g00777 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00777 K08065 - mtr:11422870 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00777 1 7382946 7383562 Mepo6g01502 6 16461187 16461792 PCT