Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo1g00663 | ATGAATTACAACCACCGTCGCAGTCCTGGTGGTTTCCGCCCCGCCCCTCTCCACCGCAGCAACTTTGATAGTCCCCCGCGGTGGTCTCCGGGTAGGGTTGGTGGTGGTTTTCGTCCACCACCTGCCGGAGATGGCTTCAGACCGGTGGGTGGTGATGAATTTGGATTCAACCTGCCACCACCGCCGTTGTCTGGTCAGAAACGTGGGTTTCCGTTCTCTGGTCGTGGTGCTTCACCGGATCATTGTGATGGTGGAAATTTTGCTAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAACTGAGGATGATATTCGTCCTTTGTTTGAGGAACACGGGAATGTGGTTGAGGTCGCCCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTTATAAAGTATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCGACATACTCTTCCCGGAGGTGTTGGTCCCATCCAGGTGCGGTATGCTGATGGCGAACGGGAACGTCTTGGTGCAGTTGAGTACAAACTATTCGTGGGCTCTCTGAACAAACAGGCCAGTGTAAAGGAAGTCGAGGAAGTTTTCTCAAAATATGGACGGATTGAAGATGTTTATCTTATGCGTGATGACCAGAAGCAGAGTCGTGGATGCGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGAACAACCACTGATTGTCCGGTTCGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGATCTGCAGGATTTGGTCCAAGATTGGATTCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATTCCTCCCCCTAATGCTTGGCGTCCAATCCCTCAACCAAATACTGGGACATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATCGATTCCAAGATCTGGGGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGACTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAACTCAGTCTCCGTCAGCAATGCCGCAACAGAATTTCAACCAGCCTCCACCACAAATTCCACCGGTCAATCAACAAATACCTCCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATTCCCTATCCACAAACATCCACACGTCCATCTTTCAGGCAGCATGGTCAGCCACAACCTCTCCCTGCTGGTCCACAGGGATTGGGCATAAATGCACAGTTTTCAGTTTCTCAGCCTCAAACTCAGCAGGGTGTTTTGTCTGCTACGTTTCCTCAGACCTCTCTTGATACCAACATGCAATCTAATACCGCATTGACTACTCCAAGTCAACAGCAAATTCCTCCTTCTATGCAGCAGCAGCATCATCCACTTCAACCTCTTCAACAATCCCCTTCTCAGTTAGCTCAATTGTTGTCACAACAAACACAGACGTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCCAGTCAAGCATCGCCATTGCAGCATCATGCAGAAGCTGCTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCAGCGACCGGCACTCATGTAGCTGCACCTGCTGCAGGTGTTCCTTCATCAACACCTGCTACTTCTTCTGTACAACCAATAAGCCAGAACACAACTCTTGGAAATTGTAATTGGACAGAGCATCTATCTCCCGAGGGCTTCAAATACTACTATAATAGTGTAACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATCATTTGAACAGCAAAAGCAACTGCTCAATCAGTCTGTTCAGCAGTCTCAAATTCAGGGACAGCCTTCAATACCACCCACCCAGCAAGTTGCACAAAACCAACAGGTTCAGCCTCAAAGTCATTTCCGAGGACAAGTTCACCATCAACAAATACAGCAGCCTTCGTCGTTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGCTATAAACAGTTACAGACATCATTTGTTTCTGCTGGTGATCCTGGACGTTATTCACAGGGTATCAATAATACACAAGAGCTAATGTGGAAAAACAGGCCTACAGGAGTCTGA | 2214 | 0.4734 | MNYNHRRSPGGFRPAPLHRSNFDSPPRWSPGRVGGGFRPPPAGDGFRPVGGDEFGFNLPPPPLSGQKRGFPFSGRGASPDHCDGGNFAKLFVGSVPRTATEDDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFGSAGFGPRLDSPGTRLPSNNSDPMGDHIPPPNAWRPIPQPNTGTSFNAGFHGMGPPSIPRSGDMALPINAGGPMTGMGVSIDGRFQTQSPSAMPQQNFNQPPPQIPPVNQQIPPSQKPIQSSQEFPPSHQLYPQAPIPYPQTSTRPSFRQHGQPQPLPAGPQGLGINAQFSVSQPQTQQGVLSATFPQTSLDTNMQSNTALTTPSQQQIPPSMQQQHHPLQPLQQSPSQLAQLLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQASPLQHHAEAAKTQSQWGGTVSHAATGTHVAAPAAGVPSSTPATSSVQPISQNTTLGNCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTSFEQQKQLLNQSVQQSQIQGQPSIPPTQQVAQNQQVQPQSHFRGQVHHQQIQQPSSFQAYGVTGHQNVQELGYKQLQTSFVSAGDPGRYSQGINNTQELMWKNRPTGV | 737 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 259 | 318 | - | - | |
Mepo1g00663 | 737 | Gene3D | - | 174 | 267 | IPR012677 | - | |
Mepo1g00663 | 737 | ProSitePatterns | WW/rsp5/WWP domain signature. | 600 | 625 | IPR001202 | GO:0005515 | |
Mepo1g00663 | 737 | FunFam | Flowering time control protein FCA | 175 | 265 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 353 | 367 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 349 | 439 | - | - | |
Mepo1g00663 | 737 | PANTHER | RNA BINDING PROTEIN | 41 | 536 | - | - | |
Mepo1g00663 | 737 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 278 | IPR035979 | GO:0003676 | |
Mepo1g00663 | 737 | SUPERFAMILY | RNA-binding domain, RBD | 73 | 173 | IPR035979 | GO:0003676 | |
Mepo1g00663 | 737 | Gene3D | - | 579 | 648 | - | - | |
Mepo1g00663 | 737 | SUPERFAMILY | WW domain | 599 | 632 | IPR036020 | GO:0005515 | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 368 | 385 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Mepo1g00663 | 737 | Pfam | WW domain | 599 | 625 | IPR001202 | GO:0005515 | |
Mepo1g00663 | 737 | SMART | ww_5 | 595 | 627 | IPR001202 | GO:0005515 | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 528 | 559 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 466 | 498 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 643 | 669 | - | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 386 | 423 | - | - | |
Mepo1g00663 | 737 | CDD | WW | 597 | 627 | IPR001202 | GO:0005515 | |
Mepo1g00663 | 737 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 181 | 248 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 90 | 153 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | Gene3D | - | 83 | 173 | IPR012677 | - | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 571 | 598 | - | - | |
Mepo1g00663 | 737 | FunFam | flowering time control protein FCA isoform X2 | 82 | 174 | - | - | |
Mepo1g00663 | 737 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 600 | 627 | IPR001202 | GO:0005515 | |
Mepo1g00663 | 737 | SMART | rrm1_1 | 89 | 165 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | SMART | rrm1_1 | 180 | 255 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 179 | 259 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 88 | 169 | IPR000504 | GO:0003723 | |
Mepo1g00663 | 737 | MobiDBLite | consensus disorder prediction | 577 | 598 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo1g00663 | Mepo-Chr1 | 6350378 | 6362417 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo1g00663 | 86 | 265 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.020 | 5.02e-15 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo1g00663 | - | - | tpra:123920645 | 1084.32 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Mepo1g00663 | 1 | 6350378 | 6362417 | Mepo1g00663 | 1 | 6350378 | 6362417 | ECH |