Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00603 ATGGAACCAGAAGACTGGGATTTGAGCGGTGAAGACCTTGATTCTCTTGAAAGAGACGCTTTCCAGAAAATCGCTCAATTCCGCTCCCACCCTTCAAACCCTCATCCTCCTCCTCCTCCTCCTCAAAGAGTTGATGCTTTTCCCCAAGGACCTGCTAGACCACTTCCAACCTCGTTAAAATCAGCTAACAATGCTGTTGAGCATTATAAAGAATTGACAAAAGCTTCCGTCAAATTTTTTCTCCATTCCAGTGGAAACATTGCGGCAAAGTTTCAGTATGATCAGGTAATAGTTGCCGCTTTTAGAAGAATCCCTAAATCTTTTTGGAATGCCAAAGAACGCTTATGGTTGTTCCCTCTCTCTTCTCTGTCAGAAGCCGAAAAGGTTCTTAAAGACATATCCTGTTATAATGTTCAGGTGGAGAACTTGGATCCCTTAGTGCAACGTGCTATTACTGCTGCCACTTCTGTTCCTGATCTTCGAGATCGATATGACAAGATCCCTAGCGATGTTGAATCAAAACTTTTGCCATTTCAGCGAGACGGTATAAGGTTTATATTACAGCATGGAGGTCGTGCTTTTTTAGCAGATGAAATGGGTCTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGATTCGTGGCCTGTTCTCATACTTGCACCATCTGCATTACGTTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAATTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAAAATTCATCTGGATGGACTATTCAACATTATCTCATATGATCTGGTGCCAAAGATGCAAAGTACACTCATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCCCAGGCAAAGAGAACAACTGCTTCTCTTCCGGTTATAAAGAAAGCACAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCACGACCAATTGAACTATTCAAACAACTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAATGTTTGGAGTTTATCAAGGGGCAAGTAATCATGAGGAATTGCACAATTTGATGAAGGCAACAACGATGATCCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTGGCCGACAAGGACATGAAGCAAATTAATGCTCTATTTCGTGAGTTGGAGAGGGTAAAGGCCAAAATTAAGGCAGCTAAGTCACAAGAGGAGGCTGAATCACTCATGTTTTCTAAACAGAATATGATTAACAAGCTTTATACTGATTCTGCGGAAGCCAAGATTCCAGCTGTTCTTGATTATCTTGGAACTGTAATTGAGGCAGGCTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGCTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATACTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACATTGACTTCTGCCAGCACAGTCATCTTTGCAGAATTGTCGTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGCGTTCATAGAATTGGCCAGGAGTCTTCAGTAAATATATACTACTTGCTTGCCAATGACACAGTTGATGATATCATATGGGACACAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAAAAAACTCTTGACCATTTTGTCAGAAGATGTGACAACAGCACAGGTGGATTAGAACATCAGTCAACCCCCAAACGTCCCCGGTACTGA 2010 0.4199 MEPEDWDLSGEDLDSLERDAFQKIAQFRSHPSNPHPPPPPPQRVDAFPQGPARPLPTSLKSANNAVEHYKELTKASVKFFLHSSGNIAAKFQYDQVIVAAFRRIPKSFWNAKERLWLFPLSSLSEAEKVLKDISCYNVQVENLDPLVQRAITAATSVPDLRDRYDKIPSDVESKLLPFQRDGIRFILQHGGRAFLADEMGLGKTLQAIAVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQIGGSNRGGFNIVSSSAKSKIHLDGLFNIISYDLVPKMQSTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGMFGVYQGASNHEELHNLMKATTMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKAAKSQEEAESLMFSKQNMINKLYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVACIRIDGGTPSGSRQQLVTEFQEKDTIKAAVLSIKAGGVGLTLTSASTVIFAELSWTPGDLIQAEDRVHRIGQESSVNIYYLLANDTVDDIIWDTVQSKLENLGQMLDGHENTLKVSDDQPPLSSPAKQKTLDHFVRRCDNSTGGLEHQSTPKRPRY 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00603 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 476 623 IPR001650 -
Mepo1g00603 669 CDD DEXHc_HARP_SMARCAL1 175 398 - -
Mepo1g00603 669 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 655 - -
Mepo1g00603 669 Pfam SNF2-related domain 194 454 IPR000330 GO:0005524|GO:0140658
Mepo1g00603 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 356 IPR014001 -
Mepo1g00603 669 ProSiteProfiles HARP domain profile. 71 145 IPR010003 -
Mepo1g00603 669 Pfam Helicase conserved C-terminal domain 477 584 IPR001650 -
Mepo1g00603 669 MobiDBLite consensus disorder prediction 24 56 - -
Mepo1g00603 669 Coils Coil 417 451 - -
Mepo1g00603 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 629 IPR027417 -
Mepo1g00603 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 398 IPR027417 -
Mepo1g00603 669 Gene3D - 149 405 IPR038718 -
Mepo1g00603 669 SMART helicmild6 501 584 IPR001650 -
Mepo1g00603 669 CDD SF2_C_SNF 471 595 - -
Mepo1g00603 669 Gene3D - 434 656 IPR027417 -
Mepo1g00603 669 SMART ultradead3 171 364 IPR014001 -
Mepo1g00603 669 MobiDBLite consensus disorder prediction 31 47 - -
Mepo1g00603 669 FunFam Chromatin remodeling factor18 148 422 - -
Mepo1g00603 669 MobiDBLite consensus disorder prediction 650 669 - -
Mepo1g00603 669 FunFam Chromatin remodeling factor18 433 665 - -
Mepo1g00603 669 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00603 Mepo-Chr1 5708571 5719059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00603 455 604 RAD5 or RAD16-like Gene Family AT1G05120 29.221 2.49e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo1g00603 SNF2_N 4.8e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00603 K14440 - gmx:100797654 1082.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00603 1 5708571 5719059 Mepo1g00603 1 5708571 5719059 ECH
Mepo1g00603 1 5708571 5719059 Mepo2g03073 2 40393023 40393916 PCT