Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00571 ATGATTGTTGACATTCACAGCATCAGTGATCAAGAGTCAGTCAAGCATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGAGCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGTATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCCTCTGCCAATGCTAAGTCTTCTGAAATGAAGAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTACCACACCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTCCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGAGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGAAGCTAACAACATTGATAACAACTTCAGCCCAGTAATGGTGCCACTTGAGGGCAAATAG 516 0.4283 MIVDIHSISDQESVKHFSAANWPLSTSGLNAMSPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAPEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKEANNIDNNFSPVMVPLEGK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00571 171 Pfam Jas motif 122 146 IPR018467 -
Mepo1g00571 171 MobiDBLite consensus disorder prediction 140 171 - -
Mepo1g00571 171 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 33 154 IPR040390 -
Mepo1g00571 171 MobiDBLite consensus disorder prediction 80 102 - -
Mepo1g00571 171 ProSiteProfiles Tify domain profile. 32 67 IPR010399 -
Mepo1g00571 171 SMART tify_2 32 67 IPR010399 -
Mepo1g00571 171 MobiDBLite consensus disorder prediction 143 162 - -
Mepo1g00571 171 MobiDBLite consensus disorder prediction 80 111 - -
Mepo1g00571 171 Pfam tify domain 33 66 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00571 Mepo-Chr1 5484000 5486356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00571 38 162 Tify Gene Family AT5G20900 39.370 2.08e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mepo1g00571 tify 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00571 K13464 - gmx:100306655 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00571 1 5484000 5486356 Mepo6g01971 6 23036978 23040324 PCT