Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00525 ATGAAGGCTCCAAACAATGGTTACCTGCCCAATTCAGGAGAAGGGGAAAGGAAGACGATCAATTCAGAATTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCACCCGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCGGCTTCCATGCAAAAACAGACCGATTTCATACCCAGTTACCCCAATCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGACGAGGTCTACGCACAAATGACACTTCAACCTGTAAACAAATATGACAAGGACGCAATACTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACCGAATTCTTTTGCAAAACTCTAACTGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATCTGCATGACAATACATGGGCATTTAGACATATTTATAGAGGGCAACCAAAGAGACATCTGTTGACTACTGGTTGGAGTGTATTTATCAGCACTAAGAGACTTTTTGCTGGAGATTCTGTTCTTTTTATTAGAGATGAAAAACAGCAACTTCTTTTAGGCTTGAGGCGCGCTCATAGACAGCAGCCAGCGCTTTCTTCATCGGTAATATCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCCGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCTTTGGCCAAGTATAACAAAGCCATGTACACTCAAGTGTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGTAGATATATGGGTACAGTTACAGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTTTCGATTTGGGATATTGAACCAGTAGTGACTCCTTTCTATATCTGTCCACCTCCATTTTTCAGGCAAAACTTCCCCGGCCACCCGGGCATGCCAGATGACGGGTCAGATGTAGAAAATTCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAAAAATCAGTTTTCAGGTGCTCAATCAGGATGTTTCCCATCCATGCTCTCGTCTAATACTCTGCATGGTAATCTTAGCACCGATGACCCATCCAAATTATTAAGCTTCCAAGCTCCAGCCCCCTCTGCGCCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAACAGTCCCCAACATCATGGCCTCAGCAACAGCAGCAGCTACAGCAGCAGCAGCTGCAGCAACAACAACAGCAACAGCAGCTGCAGTCATTGTCACAAATACCAATGAACCAGTTCCAGCAACAAAGGCAACAGCAGCTGCCTGAATCACAAAACCTGACACTGCTACAACAACAAATTACTCAGCAGCTACAGAAACAGCCACAGTCATCTCAACAGGCTATTATGAATAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGTTTCAACAGCCGCAACCACCAGCCTACGCTCAGCTTCAGCAACAACAACAGTTGCTCCAGGGAAGTATCCCACACCAGCAAAGTATCCAATCGGCAAGCAAGAATGCATTCCCACTGACATCCCTACCACATGACTCACAATTTCATCAACAGATAGACCAGCAACCGAGTATCTTACAGAGACAGCAGCAACAGACACAATCGCAACAATCTTCACTGCAGGTGCTGCAACAAAGCCAGCCACAGAGGATGCAACCAAATCTTTCAGCGACTCAAATGTCTCAACAAAACACCTCGGAGCAACAACTGCAGCTACAGTTTTTGCAAAAATTGCAGCAGCAGCAGCAGCAACAACTTCTTTCGACGTCTAGCCCACTTTTGCAATCTCAGCTTCTGCAGCAACAAAATACTAACCAACAAAACCATCAATTACCACAGCTTCCTATATCCCAACATCACAATCAACAGTTTGGTAATAATGCATTTTCAACGGAGAAGCTTCTCAACAGCAACAATTTGTCTTCTTCATCTCTTATGCAATCAAACCAGCTTTCTGTGAATCAAACCCGAAATACTCAGAAGCCACTCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACATCGCCATCTACTAATAACTGCCAGATAACTCAACCAAACCTCCTGAAAAGAAATCAACAAGTGCCCACTACAATAGGCGGGATCTTGACAGTGGAGCCAACCAGTAATCTGATACAGGACCTACAGAGTAAGTCTGACATGCATATCAAACACGAGTTCTCAAATGTAAAAGGATCTAACCAGCTAAAGTATAAAGGCACAACTACTGATCAACTGGAAGCTTCTTCTGGAACATCATACTGTCTGGATCCTGGCAACGTTCAACAGAGTTTGCCACTATCCAATTTCTGCATGGAAGGGGATGTCCAATCGAACCCTCGAAACAATCTTACGTTTGACTCTAATCTTGATGGTCTAATGTCTGATACTATGCTTTCAAGGGGTTTTGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACCGAGCTTTCCACTGCTGATATTAGCTCACAGTCATTTGGATTGCCAGACATGTCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTAATGATGTTTCTGGGGTTTTGAACAATGGCTTGCGGGCAAACCAAAATCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAACTCCGGTATGATTTAGCACGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAGTTAGTATATGTGGATCACGAAAATGACATTCTTCTTGTTGGTGATGATCCTTGGGAGGAATTTGTAAGTTGTGTTCAGAGTATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGTTTGGATGGGGATTTAGGTAATGTTACAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3348 0.4349 MKAPNNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRAHRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSLVQWMSMQQKNQFSGAQSGCFPSMLSSNTLHGNLSTDDPSKLLSFQAPAPSAPNLQFNKPNLPNQINQLQQSPTSWPQQQQQLQQQQLQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQITQQLQKQPQSSQQAIMNNGVVASNQITNQFQQPQPPAYAQLQQQQQLLQGSIPHQQSIQSASKNAFPLTSLPHDSQFHQQIDQQPSILQRQQQQTQSQQSSLQVLQQSQPQRMQPNLSATQMSQQNTSEQQLQLQFLQKLQQQQQQQLLSTSSPLLQSQLLQQQNTNQQNHQLPQLPISQHHNQQFGNNAFSTEKLLNSNNLSSSSLMQSNQLSVNQTRNTQKPLTITRVPSTLTDGEAPSCSTSPSTNNCQITQPNLLKRNQQVPTTIGGILTVEPTSNLIQDLQSKSDMHIKHEFSNVKGSNQLKYKGTTTDQLEASSGTSYCLDPGNVQQSLPLSNFCMEGDVQSNPRNNLTFDSNLDGLMSDTMLSRGFDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPDMSFKPGCSNDVGINDVSGVLNNGLRANQNQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGTDSGNAWRGQYDDNSAASFNR 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00525 1115 SMART B3_2 126 228 IPR003340 GO:0003677
Mepo1g00525 1115 MobiDBLite consensus disorder prediction 473 493 - -
Mepo1g00525 1115 ProSiteProfiles PB1 domain profile. 988 1081 IPR000270 GO:0005515
Mepo1g00525 1115 SUPERFAMILY CAD & PB1 domains 992 1066 - -
Mepo1g00525 1115 FunFam Auxin response factor 289 361 - -
Mepo1g00525 1115 MobiDBLite consensus disorder prediction 1087 1115 - -
Mepo1g00525 1115 Coils Coil 498 518 - -
Mepo1g00525 1115 MobiDBLite consensus disorder prediction 643 669 - -
Mepo1g00525 1115 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo1g00525 1115 FunFam Auxin response factor 124 228 - -
Mepo1g00525 1115 CDD B3_DNA 125 217 IPR003340 GO:0003677
Mepo1g00525 1115 Gene3D - 289 360 - -
Mepo1g00525 1115 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Mepo1g00525 1115 Gene3D - 124 227 IPR015300 -
Mepo1g00525 1115 FunFam Auxin response factor 983 1077 - -
Mepo1g00525 1115 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mepo1g00525 1115 Pfam AUX/IAA family 983 1074 IPR033389 -
Mepo1g00525 1115 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mepo1g00525 1115 Gene3D - 983 1077 - -
Mepo1g00525 1115 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 559 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00525 Mepo-Chr1 4976505 4982939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00525 1 1115 B3 DNA Binding Superfamily AT1G19220 61.821 0.0 1210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo1g00525 AUX_IAA 2.3e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00525 K14486 - gmx:100816054 1589.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00525 1 4976505 4982939 Mepo1g00525 1 4976505 4982939 ECH
Mepo1g00525 1 4976505 4982939 Mepo6g01890 6 21851357 21859025 PCT