Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00521 ATGTTGCCACAGAAGTTTAGGCAGAATCCCATGATTCAGCAACACTCTCTCTACCAACACCCTGCTCTTATTACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTTCAGAGCCCCTACTTCAAGAGCTGTTTTCAAGTGCTGGTGCCCTTGAAGGGTGCAAGCTTATTCGAAAAGAAAAGTCATCATATGGCTTCGTGGACTACTTTGATCGCAGTTCAGCTGCAATTGCTATTGTGACTCTCAATGGGAGGAATATTTTTGGGCAGTCTATCAAAGTTAACTGGGCGTATACTCGTGGTCAGAGAGAAGACACATCAGGACACTTCCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGCGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGACCAGAAGACAGGCCGATCTAGGGGGTTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTTGGAAGTAGACAGATCCGTTGTAATTGGGCCACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGAGTCCAAAAGTGTTGTGGAGTTAACTAGTGGAACATCTGAAGAAGCGCAGGGAATGACCAGTGATGACAGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTTGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGCAATGCTCGGTTTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACAGCCTCTACTCCTCTTCCACCACCAGCTTCTACGCATGTACCAGTGCCAGGGTTTTCACCTGCCGGTCTTGCATTGTATGAACGCCAGTTGGCTTTGAGCAAAATGAATGAGGCACATGCCGTAAAGCGGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTATGGGGCAGGATTCCCTAATCTTGCCACCACCCAGCACCTAATGTACTACCAGTAA 1218 0.4655 MLPQKFRQNPMIQQHSLYQHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSESKSVVELTSGTSEEAQGMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPASTHVPVPGFSPAGLALYERQLALSKMNEAHAVKRAAMGMGALGAGYGAGFPNLATTQHLMYYQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00521 405 FunFam Oligouridylate-binding protein 1C 230 331 - -
Mepo1g00521 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 330 - -
Mepo1g00521 405 SMART rrm1_1 48 117 IPR000504 GO:0003723
Mepo1g00521 405 SMART rrm1_1 254 323 IPR000504 GO:0003723
Mepo1g00521 405 SMART rrm1_1 133 206 IPR000504 GO:0003723
Mepo1g00521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Mepo1g00521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Mepo1g00521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Mepo1g00521 405 SUPERFAMILY RNA-binding domain, RBD 127 215 IPR035979 GO:0003676
Mepo1g00521 405 Gene3D - 3 128 IPR012677 -
Mepo1g00521 405 Gene3D - 129 227 IPR012677 -
Mepo1g00521 405 FunFam oligouridylate-binding protein 1-like isoform X2 130 225 - -
Mepo1g00521 405 SUPERFAMILY RNA-binding domain, RBD 29 127 IPR035979 GO:0003676
Mepo1g00521 405 SUPERFAMILY RNA-binding domain, RBD 244 332 IPR035979 GO:0003676
Mepo1g00521 405 Gene3D - 231 331 IPR012677 -
Mepo1g00521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 121 IPR000504 GO:0003723
Mepo1g00521 405 MobiDBLite consensus disorder prediction 214 251 - -
Mepo1g00521 405 CDD RRM2_PUB1 131 210 - -
Mepo1g00521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Mepo1g00521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00521 Mepo-Chr1 4953935 4958891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00521 48 327 Eukaryotic Initiation Factors Gene Family AT2G23350 29.553 1.18e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00521 K13201 - gmx:100813736 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00521 1 4953935 4958891 Mepo1g00521 1 4953935 4958891 ECH