Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00520 ATGGACTTATTTCCCACAAACGTGACACCAAAAAATGTTACACCTGTGGATTCTTTGTCTCCAAGAAGTAATAACTCAATGGTTAAGGAACCTGAAACTGCACAGTTGACATTGTTTTATAATGGAGAAGTTATTGTGTTGGATGATTTTCCTGTTGAGAAAGTTGAGGAGCTAAAGTCATTTGCAAGCACTCAAACTCGGCCTTCAGTTATTCCTGATACGATCCTTCAACCACCTCCCACACTAACGGGTAATTGCTCGGAAATATTTTTTGTATTAGGAGTTTCTGCCAAATCACCATATCAAAGAAGCGATCCCGACTCTGCTCCAAAAAAACCTACTTAA 345 0.3913 MDLFPTNVTPKNVTPVDSLSPRSNNSMVKEPETAQLTLFYNGEVIVLDDFPVEKVEELKSFASTQTRPSVIPDTILQPPPTLTGNCSEIFFVLGVSAKSPYQRSDPDSAPKKPT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00520 114 ProSiteProfiles Tify domain profile. 29 64 IPR010399 -
Mepo1g00520 114 SMART tify_2 29 64 IPR010399 -
Mepo1g00520 114 MobiDBLite consensus disorder prediction 1 28 - -
Mepo1g00520 114 Pfam tify domain 30 58 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00520 Mepo-Chr1 4945192 4946495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00520 30 70 Tify Gene Family AT1G19180 48.780 2.89e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mepo1g00520 tify 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00520 K13464 - gmx:100802800 75.8701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00520 1 4945192 4946495 Mepo1g00520 1 4945192 4946495 ECH
Mepo1g00520 1 4945192 4946495 Mepo6g01872 6 21557241 21559725 PCT