Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00519 ATGTCGACTTCCTCGGACATTTCTGGTTTTTCCGGCAACAAACTGACAAAATCTTCGGAGAAACCTACGTTTTCTCAAACTTGTAATCTATTGAGCCAATATCTCAAGGAGAAGAAGGGTAGTTTCGAAGGCCTTAACCTTCACAAGCCATGCACCCCCGAAACAAATGGGTCATCACCTGGTTCATCTTCTCACTCTGGAATAACCATGGATTTGTTTCCCACAAACTTGACACCGAAAAACCTTACAACTATGGATTTTTTCTTTCCAAGAGTTGTTAACCCTATGGTTAAAGAGCCTGAAACTGCACAATTAACAATGTTTTATAATGGACAAGTTATTGTGTTGGATGATTTTCCTGCTGAGAAAGTTGAGGAGCTGAAATCATTTGCTAGAACTCAGGCTCAGCATTCAGATGTTCCTTATATGATCCCTCAACAACCTCCCTCACTAATTGATATGCCAATTGCTAGAAAAGCTTCACTTCGTCGATTCATGGAGAAGAGGAAAGATAGAGTTTCTGCCTATTCACCATATCAAAGAATCTGTCCTGACTCCTCTGCTCCAGAAAAGCATGCTGAATCCGCTCCATGGCTTGTGTTAGGTGCTAAATCAATGTAA 621 0.409 MSTSSDISGFSGNKLTKSSEKPTFSQTCNLLSQYLKEKKGSFEGLNLHKPCTPETNGSSPGSSSHSGITMDLFPTNLTPKNLTTMDFFFPRVVNPMVKEPETAQLTMFYNGQVIVLDDFPAEKVEELKSFARTQAQHSDVPYMIPQQPPSLIDMPIARKASLRRFMEKRKDRVSAYSPYQRICPDSSAPEKHAESAPWLVLGAKSM 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00519 206 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Mepo1g00519 206 MobiDBLite consensus disorder prediction 51 67 - -
Mepo1g00519 206 Pfam tify domain 99 127 IPR010399 -
Mepo1g00519 206 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 193 IPR040390 -
Mepo1g00519 206 SMART tify_2 98 133 IPR010399 -
Mepo1g00519 206 MobiDBLite consensus disorder prediction 1 23 - -
Mepo1g00519 206 MobiDBLite consensus disorder prediction 46 67 - -
Mepo1g00519 206 Pfam Jas motif 155 180 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00519 Mepo-Chr1 4938543 4940232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00519 1 204 Tify Gene Family AT1G19180 36.328 1.02e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mepo1g00519 tify 4.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00519 K13464 - gmx:100802800 183.726