Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00478 ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAACCTAAGTTACCCAATCACTTTCGATCATGCTCCGCCAACAAGCTTTCGTGCATTGACTGTGGACAAATGTTTGGTCGAGACACTGTTCAGAACCACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGAAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGCAAACAAAGGCCAGTAGTTGATATTAATGTGGGTTTATCTGAACGTCCTCCATGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCACTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCGAAAGCCCGAGCGTTCCATGCTTCGAAGCAACCACCAGTCCAGACAGATAATTCTGCCTCTGATGCAAAGGATGCAGTGGAGACGGCTTCTAATGGTATGGCAAAAGATGACAAAATTGCAGAGCAGCCAAAGTTGCACGAGTCTTCTGAACAAAATAACCTGAAACCGGGGAATGAAGTTTCTTCTGAAAAGAAAAAGAGGAAACGTGAAGCATTAGAGGTCGACGTTATTAAAAAAAGCAAGAATGACACATCAGTTGACACGGAAAATGGGGAAGTAATTCAGGGCGAGAAGGCAAGAGAGAGGAAAATAAAGTGGAAGAAGTTTATCAAAGCAGCCTTGAAATCTCATCCTGATGGATTGAAGATGAAGAAACTGAGAAAAGTTGTTTTCAAAGCACTGCAGGAATCTAGCATTGTAGTAAATGAAAATGAATTGAGCGAGGCGATTGAGCAGAAGATAAACTCCAGCTCCAACTTTGCAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA 885 0.4249 MVWFQCEDCGDNLKKPKLPNHFRSCSANKLSCIDCGQMFGRDTVQNHTQCITEAEKYGPKGQGKTLNAAAAKPVKDGKQRPVVDINVGLSERPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASKQPPVQTDNSASDAKDAVETASNGMAKDDKIAEQPKLHESSEQNNLKPGNEVSSEKKKRKREALEVDVIKKSKNDTSVDTENGEVIQGEKARERKIKWKKFIKAALKSHPDGLKMKKLRKVVFKALQESSIVVNENELSEAIEQKINSSSNFAVENKYVRLVAKD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00478 294 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 291 IPR039999 GO:0003677
Mepo1g00478 294 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Mepo1g00478 294 MobiDBLite consensus disorder prediction 131 146 - -
Mepo1g00478 294 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Mepo1g00478 294 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Mepo1g00478 294 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Mepo1g00478 294 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Mepo1g00478 294 Gene3D Classic Zinc Finger 89 130 - -
Mepo1g00478 294 Pfam Zinc-finger of C2H2 type 95 119 - -
Mepo1g00478 294 MobiDBLite consensus disorder prediction 122 192 - -
Mepo1g00478 294 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Mepo1g00478 294 SUPERFAMILY beta-beta-alpha zinc fingers 90 126 IPR036236 -
Mepo1g00478 294 FunFam UBP1-associated proteins 1C 89 132 - -
Mepo1g00478 294 Gene3D - 1 50 - -
Mepo1g00478 294 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00478 78 221 C2H2 Transcription Factor Family AT2G19380 39.583 5.99e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00478 K15263 - gmx:100790703 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00478 1 4568444 4572327 Mepo1g00478 1 4568444 4572327 ECH