Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00461 ATGGGTGACGCCACGAACTGGAACGAAGATGCGTACAGAGAATCCGTATTAAAAGAAAGAGAGATTCAAACTCAAACCGTTTTCAGAACTGCTTGGGCTCCTTCTCAATCTCAATCTCTCATCGTTGCTTCTAGTGATGGTTCCATTGCTTCTTACTCTCTCCCTTCCACCATCACCGCTTCTAAGCTCAAAAATGTTAACCATTCTTATTCTTATTCTTATTCTTATTCAATTCATCATTTCACTGTTTTTAAATTCAAACTACAAATTCATATTTATTTTTATTTGTTGCAGCCATTTGGTTTTGTTAATGCCGATGCTGATGATTTGTTAGCTGAGCCAGATTGCTTGTTTCAAGCGCATCATGGGTCTGCTTATGATGTCAAATTCTATGGTGATGACGAAAATGCTCTCTTGCTCAGTTGTGGTGATGATGGGCGGATTCGAGGATGGAGATGGAAGGAACTTACAAGCTTCAAGTATTATAATATTTCTTCAGAAGGAAATGATATCAAGCCCGTCCTGGATGTGGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTTCCTGAGAATAATGCTATTGCTGTAAATACTCAGGCAGGATCTGTTTTCGCTGCGTCCGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAATTAAAAACGGTATTCAAGGGACACTCTGATTACTTGCATTGCATTGTTGCTCGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACAACACGAATTTGGGATTGCAAGAGTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTGCAGAGTGCACATTAAACTTTTCCACTCGAGCTTCTGTACAGGATCTGTTATTCGACAATAATCAAATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGCGATTCTTTCACAAATACCGTGTGCTCCTCCATCAGCCTTTTCTATCTCCTTACATCCAGCAGGGGTTACTGCCGTTGGTGGCTACGGATGTCTTGTGGATGTAATCTCACAATTTGGCAGCCACATGTGCACATTTCGATGCCAATGTGTTTAG 1215 0.4156 MGDATNWNEDAYRESVLKEREIQTQTVFRTAWAPSQSQSLIVASSDGSIASYSLPSTITASKLKNVNHSYSYSYSYSIHHFTVFKFKLQIHIYFYLLQPFGFVNADADDLLAEPDCLFQAHHGSAYDVKFYGDDENALLLSCGDDGRIRGWRWKELTSFKYYNISSEGNDIKPVLDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCIQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPAAECTLNFSTRASVQDLLFDNNQILTVGADPILNRFDMNGAILSQIPCAPPSAFSISLHPAGVTAVGGYGCLVDVISQFGSHMCTFRCQCV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00461 404 SMART WD40_4 13 53 IPR001680 GO:0005515
Mepo1g00461 404 SMART WD40_4 111 152 IPR001680 GO:0005515
Mepo1g00461 404 SMART WD40_4 182 220 IPR001680 GO:0005515
Mepo1g00461 404 SMART WD40_4 223 262 IPR001680 GO:0005515
Mepo1g00461 404 SMART WD40_4 273 311 IPR001680 GO:0005515
Mepo1g00461 404 SMART WD40_4 314 350 IPR001680 GO:0005515
Mepo1g00461 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 262 - -
Mepo1g00461 404 Gene3D - 181 401 IPR015943 GO:0005515
Mepo1g00461 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Mepo1g00461 404 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 2 403 IPR042626 -
Mepo1g00461 404 Gene3D - 7 163 IPR015943 GO:0005515
Mepo1g00461 404 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Mepo1g00461 404 Pfam WD domain, G-beta repeat 280 311 IPR001680 GO:0005515
Mepo1g00461 404 SUPERFAMILY WD40 repeat-like 24 390 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00461 201 267 Eukaryotic Initiation Factors Gene Family AT2G46280 31.343 3.82e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00461 K13175 K03257 gmx:100820024 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00461 1 4425445 4431753 Mepo1g00461 1 4425445 4431753 ECH
Mepo1g00461 1 4425445 4431753 Mepo6g01762 6 19830999 19835389 PCT