LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g00454	ATGGCGGTGGCACACGGTGGTTACGACGGTGAAATCGGTGGCTACAATTCTCGCTTAATCCCAGCAATAAAACCAGAGTTATTCGACGACAGTGCAAATTCCACCTCTTACACCTACGACGACGTTGTTTCAACCGAAAAAAAAGAATCAGTACTAACCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGCTACAGCTTCTCACGCAATTCACATCAAAGAAGAAGTTCTTGAAGACGACGGTGCTAACGCGTCTTCTTCACCGCGGTTTCCTAAACCAATGGAAGGGTTACATGAGGTTGGTCCACCACCGTTTCTCAAGAAAACTTATGAAATGGTGGAGGATCCGGTAACTGACCCGATTGTTTCATGGAGCGATTCTCGTGATAGTTTTGTCGTTTGGGATTCTCATGAATTCTCCAAAATTCTTCTTCCTAAGTACTTTAAGCATAATAATTTTTCTAGCTTCATTCGCCAGCTCAACACTTATGGGTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTTCAAGCAGGGAAAAAGCATTTGTTGAAGAACATAAGAAGGAGAAGCAAGTATAACAAACTGCATCAAGGAGGATTCAATTTGATGAATCCTTGCGTTGAATCTGAAGTGGAGAAATTGAAAAAAGATCAGAACATGTTGAAATTGGAAATTCTGAAGCTAAGGCAACAACAAGAGAATTCAAATATTCAACTCACAAATGTTCAGGAGCGAGTTCGGCGAGCAGAATCGAAGCAATATCAGATGCTATTTTTCCTCACCAAAATGGCCAAAAGGCCATTGTTTATGGAGCAGATAATTCAAAAGATTAAGCGAAAAGGAGAAGTTGATGGTAATATAGACATGGTTAAAAGACCTAGGTTGCTTGGAACACAAGGTACTAGTGTTGATTATAGGTGTCAGGGTCGTGAACAATTTGCTACTTTGCAATCTGAATTGAATGGACTTTTTCCTGAAAATATGAACACTGGTAGAATGGAACCACCTGTTTCCACTCCCATGGAAGATGGGCTGTGTAGCTCTTTACATGACTTGAGGGCTTGTGGTGGTTCTAGACAAAGTGTTCAAGATGCGACTTCTGCATATCATGTTATGTCAGAGAAGCTTTTGGGGGAAAATTCTGTTGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAACAGATTGGGGTGGATCTGTTAGTGGATTGGTGGGACAAACTAGTTGA	1281	0.4059	MAVAHGGYDGEIGGYNSRLIPAIKPELFDDSANSTSYTYDDVVSTEKKESVLTEEEEEEEEEEGATASHAIHIKEEVLEDDGANASSSPRFPKPMEGLHEVGPPPFLKKTYEMVEDPVTDPIVSWSDSRDSFVVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDRWEFANEGFQAGKKHLLKNIRRRSKYNKLHQGGFNLMNPCVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVQERVRRAESKQYQMLFFLTKMAKRPLFMEQIIQKIKRKGEVDGNIDMVKRPRLLGTQGTSVDYRCQGREQFATLQSELNGLFPENMNTGRMEPPVSTPMEDGLCSSLHDLRACGGSRQSVQDATSAYHVMSEKLLGENSVVDEEMDVNDSNIYLELEDLISKPTDWGGSVSGLVGQTS	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g00454	426	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	92	312	IPR027725	-
	Mepo1g00454	426	SMART	hsfneu3	102	195	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo1g00454	426	SUPERFAMILY	"Winged helix" DNA-binding domain	102	195	IPR036390	-
	Mepo1g00454	426	ProSitePatterns	HSF-type DNA-binding domain signature.	145	169	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo1g00454	426	MobiDBLite	consensus disorder prediction	65	81	-	-
	Mepo1g00454	426	FunFam	Heat shock transcription factor 1	99	196	-	-
	Mepo1g00454	426	Coils	Coil	217	258	-	-
	Mepo1g00454	426	Gene3D	-	99	196	IPR036388	-
	Mepo1g00454	426	MobiDBLite	consensus disorder prediction	30	99	-	-
	Mepo1g00454	426	PRINTS	Heat shock factor (HSF) domain signature	106	129	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo1g00454	426	PRINTS	Heat shock factor (HSF) domain signature	144	156	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo1g00454	426	PRINTS	Heat shock factor (HSF) domain signature	157	169	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo1g00454	426	Pfam	HSF-type DNA-binding	106	195	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g00454	Mepo-Chr1	4363845	4366634	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g00454	92	304	HSF	AT2G26150	54.955	1.58e-78	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mepo1g00454		HSF_DNA-bind	5e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g00454	K09419		-	gmx:100818430	540.421