Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00436 ATGATACCACCACCTTATCGCCATTCAATATCTTCGTCCGTCATGCCTATTGATCTTAATCAAGATCAAAACCATGACCTTTCAAGTCCAAATTCTTCTTCATTTTCTTCTCTTTCAGCATCATATCCTACTCTCTTAAACCCACAAGATCAAGTTCAACAACCATCTTATTACTGCCAAACAAACCACTTACCACATGATCATGAGGTTGATAAGGTTAATATTCCCTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGACAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATTAGTGATGAAATGAATCATAATCAAGAAGCTGAATATCAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACCGGTAGTTCTAACTTAACAAGCAACTTGAAGCAGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACGGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTATGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCTGCTGCAGCATCGGCAAATGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCACAAACTTGAAGCAAAACCACCTCATCAAAGTAGAAAGGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCTCAGGATGAGAGAGAAGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA 969 0.3891 MIPPPYRHSISSSVMPIDLNQDQNHDLSSPNSSSFSSLSASYPTLLNPQDQVQQPSYYCQTNHLPHDHEVDKVNIPSSGSWNSSTAENHDNYKTKHKLTIRWKKEQISDEMNHNQEAEYQDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNLKQIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASANGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKHKLEAKPPHQSRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00436 322 SMART GATA_3 178 229 IPR000679 GO:0006355|GO:0043565
Mepo1g00436 322 MobiDBLite consensus disorder prediction 20 42 - -
Mepo1g00436 322 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Mepo1g00436 322 FunFam GATA transcription factor 21 178 256 - -
Mepo1g00436 322 CDD ZnF_GATA 183 211 IPR000679 GO:0006355|GO:0043565
Mepo1g00436 322 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 4 322 - -
Mepo1g00436 322 Gene3D - 180 255 IPR013088 GO:0006355|GO:0008270
Mepo1g00436 322 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Mepo1g00436 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 217 - -
Mepo1g00436 322 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00436 Mepo-Chr1 4184767 4186872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00436 93 322 C2C2-Gata Transcription Factor Family AT4G26150 42.857 2.69e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo1g00436 GATA 5.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00436 - - mtr:25494244 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00436 1 4184767 4186872 Mepo1g00436 1 4184767 4186872 ECH
Mepo1g00436 1 4184767 4186872 Mepo6g01715 6 19256982 19259196 PCT