Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00428 ATGGAAAGTGATGAAGAATGCAATACAGGTTTATGTCTTGGTCTTGGAATGGGTGCAACAAAGGAGAAGAAGCAGAAATTAGTGAATAAACCTGTGATGCCACCTTGTTTTGACCTAGCTTTTGAGCTTTGTCCAAAAGAAGAAGCTATGAACGTACACAACAACAACAAGGGTGAAAGATTCAATTTGGAGAGACACCAATATTATCAAAATGTAACGTGTAGCACTGATTCTGATAACAACGATAGTAGAAAGAAACTGAGGCTAACAAAGGAGCAATCATCCATGCTTGAGAGCACCTTCAAGCTCCATAACACTCTTAATCCGGTTCAGAAAATAGCACTTGCTGACCAATTGAGTTTAAAGACAAGACAAATTGAGGTTTGGTTTCAGAACAGGAGAGCAAGGACTAAGCTGAAGCAGATAGAGGTGGATTATGAGTTGTTGAAAAAACATTGTCAAAATCTAAGTGACGAGAACAAAAGATTAAAGAAGGAATTGCAGGAACTCAAAGTTGTTGGACAATTTCCGTTATGCCCTCAACGTTTATCATCAAAACCAGTGGTGACTCATAGTACTATGTGCTCTTCTTGCGAGCAGAAACCGTTGAAGCACAATGAAGATCAGAAGAATAATTTATTAATTGATGGTTAG 654 0.3823 MESDEECNTGLCLGLGMGATKEKKQKLVNKPVMPPCFDLAFELCPKEEAMNVHNNNKGERFNLERHQYYQNVTCSTDSDNNDSRKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTKLKQIEVDYELLKKHCQNLSDENKRLKKELQELKVVGQFPLCPQRLSSKPVVTHSTMCSSCEQKPLKHNEDQKNNLLIDG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00428 217 CDD homeodomain 84 141 IPR001356 GO:0003677
Mepo1g00428 217 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Mepo1g00428 217 SMART HOX_1 82 144 IPR001356 GO:0003677
Mepo1g00428 217 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Mepo1g00428 217 Gene3D - 75 144 - -
Mepo1g00428 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 202 - -
Mepo1g00428 217 Pfam Homeobox associated leucine zipper 140 171 IPR003106 GO:0006355|GO:0043565
Mepo1g00428 217 SMART halz 140 183 IPR003106 GO:0006355|GO:0043565
Mepo1g00428 217 SUPERFAMILY Homeodomain-like 68 141 IPR009057 -
Mepo1g00428 217 Pfam Homeodomain 84 138 IPR001356 GO:0003677
Mepo1g00428 217 Coils Coil 132 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00428 Mepo-Chr1 4122671 4124071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00428 1 200 Homeobox Transcription Factor Family AT4G37790 40.244 1.13e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo1g00428 Homeodomain 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00428 K09338 - gmx:100812222 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00428 1 4122671 4124071 Mepo6g01705 6 19160364 19162118 PCT