Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00406 ATGAAATTTTGTTGTGCTGAGAACTCTGAAGGAACCCTAGCGAGCGCAGTCAGCACCGCTATCACACCTTCAGCCACCGTTTACCGTATCAGTGAAATGGGCACCAAGGCAAAGAAAGCCATGCACAAGAGTTTGAAAAGGATCAATGTTAAACCATCTCACCCTGCTGCTGATTTTTTGCCGTTGGATTGTGGTCCTGCCCGCAAACTTCCTGAACTTAAACCCCTGGAAAATAGTTCCCCTGTTTTATACATTGGTCGCATTCCACACGGGTTCTATGAGTTGGAGATGGATGCTTATTTTGGACAATTCGGTACCATCAAGAGATTGAGAATTGCCAGGAATAAAAAGACTGGAAAATCAAGACATTTTGGGTTCATACAATTTGAATCTCCTGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTTTGTGGTTCCTTCGGAAGATGTTCATCCCAATTTATGGAGAGGATTCAATTATCGTTATAAGCCTCTGGACTCTCTCCAAATTGAACGGGAACGACATGACAAGGAAAGAACATTGGAAGAACACAAAAAGTTGGTTGATAGGGTTATGAAACGTGACAAAAAACGTCGGAAAATGATAGAGGCTGCTGGCATTGATTATGAATGTCCCCAGATTGTGGGTAACCTCCAGCCTGCCCCAAAGAAGATAAAGTTCGAAGTCTGA 726 0.4242 MKFCCAENSEGTLASAVSTAITPSATVYRISEMGTKAKKAMHKSLKRINVKPSHPAADFLPLDCGPARKLPELKPLENSSPVLYIGRIPHGFYELEMDAYFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVADTMHNYLLFEHLLQVFVVPSEDVHPNLWRGFNYRYKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKKRRKMIEAAGIDYECPQIVGNLQPAPKKIKFEV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00406 241 Gene3D - 65 155 IPR012677 -
Mepo1g00406 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Mepo1g00406 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 150 IPR000504 GO:0003723
Mepo1g00406 241 Coils Coil 182 202 - -
Mepo1g00406 241 SMART rrm1_1 82 155 IPR000504 GO:0003723
Mepo1g00406 241 CDD RRM_NIFK_like 82 154 - -
Mepo1g00406 241 SUPERFAMILY RNA-binding domain, RBD 81 225 IPR035979 GO:0003676
Mepo1g00406 241 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 41 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00406 Mepo-Chr1 3911958 3914631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00406 83 154 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 3.11e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00406 K14838 - gmx:100778780 323.553