Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00350 ATGTCTTCATCATCGGATACTAATATAGGGTTGAAAAAAGGAAAATGGTCAAAAGAAGAGGATGAAATATTAAAGGCATATTTGGAAAAACATGGAACCAGAAATTGGAAGGAGGTATCAAGAAATGCAGGGCTGATACGTTGCGATTTGCCTCCACCCCCACAATGTTCATACCTTCCACTTCCTTCACGTATGATGCTTGGTGAGTATCCTCAAATTCCACCACCTATGGAGACTCAATATCAGATGTCAGAATCAAGTTCTCCATATAAAAGTGGTTCATTGAAGTCTATGTTATATAGACAAGAGAATTGGGAAGGCTTCGATGCTAGTCGCGTGCATTCCGCTGAGTTAAATTTGGTTGATGAAAAAGGGAAGAAGTCAATTTCTTTGGAGAACGATGTTGCAGCAAGCCATGGTGATTTTATGGATCTGGATCTTCGGTTAGACAATAATGATGCTAGGCATGTCCATTCGTCTGAGACAAATTTGGTTGATGAAAAAGGAAAGAAGCCAATTTATTTGGAGGACTATGTTGAAGCAAACCTTGATGACTTCATGGATCTGTGTCTTTCGATTGACTTCAGTTGA 591 0.3942 MSSSSDTNIGLKKGKWSKEEDEILKAYLEKHGTRNWKEVSRNAGLIRCDLPPPPQCSYLPLPSRMMLGEYPQIPPPMETQYQMSESSSPYKSGSLKSMLYRQENWEGFDASRVHSAELNLVDEKGKKSISLENDVAASHGDFMDLDLRLDNNDARHVHSSETNLVDEKGKKPIYLEDYVEANLDDFMDLCLSIDFS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00350 196 SMART sant 12 48 IPR001005 -
Mepo1g00350 196 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 48 - -
Mepo1g00350 196 Gene3D - 8 57 - -
Mepo1g00350 196 ProSiteProfiles Myb-like domain profile. 8 49 IPR001005 -
Mepo1g00350 196 Pfam Myb-like DNA-binding domain 13 44 IPR001005 -
Mepo1g00350 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 49 IPR017930 -
Mepo1g00350 196 CDD SANT 15 44 IPR001005 -
Mepo1g00350 196 SUPERFAMILY Homeodomain-like 8 44 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00350 Mepo-Chr1 3316352 3317919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00350 10 48 MYB Transcription Factor Family AT2G32460 56.410 3.38e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo1g00350 Myb_DNA-binding 5.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00350 K09422 - mtr:25484743 98.5969