Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00340 ATGTCTCTATCTCCTCCACAACAAGAACAAAAACAAGAATTCATATTCCGTTCTAAACTCCCAGATATTGAAATTCCAACACACCTTCCATTACACTCTTATTGTTTCCAAAACCTCTCTCAATTCAACAACCGTCCATGTCTCATCAACGGTGACACCGGAGAAACCCTAACCTACTCCGACGTCCACCTCACCGTCCGCAAAATCGCAGCCGGTCTAAACACTCTTGGAATCCAACAAGGTGATGTCATCATGATCGTCCTCCGCAACTCTCCTCAATTCGCTCTCACCTTCCTCGGTGCCTCCTTCCGTGGCGCTTTTATCACCACCGCAAATCCCTTCTACACCTCATCGGAGCTCGCTAAACAAGCCACCGCAACAAAATCTAAACTCATCATAACACAATCTTCATACCTCAGTAAAATCAAAGATTTCGCAAAACTCAACAACATCAAAATCGTGTGCATTGATTCATCACCGGAGGAAGATGAACGTGTTGTGGATTTTTCTGTTTTAACAAATGCTGATGAAAATGAATTACCAGAAGTTAAAATAAACCCAAACGACGTAGTTGCGTTACCGTTTTCTTCAGGAACTTCTGGTTTACCAAAAGGTGTTATGTTAACACATGAAAATTTAGTTACAACAATATCACAGTTAGTTGACGGTGAAAATCCACACCAATACACTAACTACGAGGATGTCTTACTTTGTGTGTTACCTATGTTTCACATCTATGCACTAAATTCGATTTTACTATCTGGTATTCGTTCTGGTGCTGCTGTTTTAATTGTTGAGAAATTTGAGATAACTAAGGTTTTGGAACTTATTGAGAAGTATAAGGTGACGGTAGCGTCGTTTGTGCCACCTATTGTTTTAGCATTGGTAAAAAGTGGGGAATCTATGAGATACGATTTGTCGTCTATTAGAGCGATGATAACTGGTGCTGCTCCCATGGGAATGGAACTTGAACAAGCTGTGAAGGATAGGTTGCCAGGAACTGTACTTGGACAGGGATATGGGATGACAGAGGCAGGACCACTTTCAATTAGCTTGGCATTTGCAAAGGAACCATTCAAGACAAAGCCTGGTGCATGTGGCACAGTTGTAAGAAACGCTGAGATGAAAATAGTGGACACAGAAACTGGTGCTTCCCTTCCAAGAAACAAAGCTGGTGAAATTTGTATTAGAGGCACCAAGGTTATGAAAGGATACCTAAATGACCCGGAGGCAACAAAGAGAACTATAGACAAAGAAGGGTGGCTACACACAGGTGACATTGGTTTAATTGACGACGATGATGAACTCTTCATTGTTGATCGATTGAAGGAATTGATTAAATACAAAGGATACCAAGTAGCTCCTGCTGAGATCGAAGCATTGTTGATTGCTCATCCAAACATTTCTGATGCTGCTGTCGTACCATTGAAAGATGAAGCTGCTGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCAAAGATCAGCGAGGATGAAATCAAGCAATACATATTACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACAGAAACTATTCCAAAAGCGGCCTCAGGAAAAATTTTGCGAAAGGAATTAACTGCAAGACTTAACGAAGGTCTAGTAGTTGCCACAAATTAA 1656 0.4076 MSLSPPQQEQKQEFIFRSKLPDIEIPTHLPLHSYCFQNLSQFNNRPCLINGDTGETLTYSDVHLTVRKIAAGLNTLGIQQGDVIMIVLRNSPQFALTFLGASFRGAFITTANPFYTSSELAKQATATKSKLIITQSSYLSKIKDFAKLNNIKIVCIDSSPEEDERVVDFSVLTNADENELPEVKINPNDVVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNYEDVLLCVLPMFHIYALNSILLSGIRSGAAVLIVEKFEITKVLELIEKYKVTVASFVPPIVLALVKSGESMRYDLSSIRAMITGAAPMGMELEQAVKDRLPGTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDKEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAEIEALLIAHPNISDAAVVPLKDEAAGEVPVAFVVRSNGSKISEDEIKQYILQQVVFYKRINRVYFTETIPKAASGKILRKELTARLNEGLVVATN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00340 551 Gene3D - 7 442 IPR042099 -
Mepo1g00340 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 539 - -
Mepo1g00340 551 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Mepo1g00340 551 SUPERFAMILY Acetyl-CoA synthetase-like 13 544 - -
Mepo1g00340 551 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Mepo1g00340 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 443 - -
Mepo1g00340 551 Pfam AMP-binding enzyme 38 448 IPR000873 -
Mepo1g00340 551 CDD 4CL 25 538 - -
Mepo1g00340 551 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Mepo1g00340 551 Gene3D - 443 546 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00340 Mepo-Chr1 3220677 3228234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00340 13 510 Monolignol Biosynthesis Gene Families AT1G51680 64.087 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00340 K01904 - gmx:100810418 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00340 1 3220677 3228234 Mepo1g00340 1 3220677 3228234 ECH