Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00339 ATGAATAATTTTCATCCTAATACTTTTCTTCACTTAAACCAACCAGATAATGAGAATATTCATCATCTGAATCTAGATCTTGTTCTTGAACCATCTTCTTCTTCTTCATCATCATCTTCATCTATGGAGCAAAGGATATTCTCATGTAACTATTGTCAGAGAAAGTTTTATAGCTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAGCTTGAAAGGACACTTGCAAAGAAGAGTAGGGAGATGAGTTCAGCCATGCAATCTTCTTATGCTGAATTACCAGAATACCCTTCAAACTTCTCTACTAATTACCATCTTGGAAGTCATGGAAATGCTCATCTTGACAACAACCATAGACAAGGTCATGTGATGAGGCATGGTGGAAGAAAAGATCAGTTTAGTTATGGTAATTCTAAGGAAGGTGTGGCTTCTTGGTCAAGGGGTTATAATAGTACTTCTGAAAATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTCTGA 510 0.3725 MNNFHPNTFLHLNQPDNENIHHLNLDLVLEPSSSSSSSSSSMEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSAMQSSYAELPEYPSNFSTNYHLGSHGNAHLDNNHRQGHVMRHGGRKDQFSYGNSKEGVASWSRGYNSTSENVQEDISQLDLSLRL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00339 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Mepo1g00339 169 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Mepo1g00339 169 MobiDBLite consensus disorder prediction 119 169 - -
Mepo1g00339 169 MobiDBLite consensus disorder prediction 119 133 - -
Mepo1g00339 169 FunFam Zinc finger protein 2 27 93 - -
Mepo1g00339 169 MobiDBLite consensus disorder prediction 137 162 - -
Mepo1g00339 169 SUPERFAMILY beta-beta-alpha zinc fingers 43 74 IPR036236 -
Mepo1g00339 169 Gene3D Classic Zinc Finger 26 96 - -
Mepo1g00339 169 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 128 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00339 Mepo-Chr1 3211758 3212860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00339 3 169 C2H2 Transcription Factor Family AT5G57520 48.851 1.54e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g00339 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00339 - - vra:106768043 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00339 1 3211758 3212860 Mepo1g00339 1 3211758 3212860 ECH