Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00294 ATGCCTTCTCATCACCAACACCATGCCGATCCCGAACAACCAAAACCAAACCCTAATCTCCTCTCCCTTTTCCTCAAACCCATCATCATGCTTCTCCTCACATCCCTCTTCTTCCTCTTCATCGGTTTTGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGCGCTCTCCACCGCCTCCGTTTCCGTCCTACTCCTACCCGTCGTCTTCAATCTCTCACCGACGCTTTCCTCCCTCGCGAAATCAACAACCTCCCCAACTTCCGGATCGCCAAAGGTTCCGTTTCCGAACCCGATTCTCGTTGTGCTGTTTGTTTGGACGGTTTTCGTAATGGTCAATGGTGTCGAAATCTCGCTGCCTGTGGTCATGTTTTTCATCGGAGATGTATTGATACGTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGGTCCAACCCTGAAACTTGTCAAGATTCGGTTGTAGAACATGAAGGTTCTTCACGATTTTGGAATTGTTTTCATAACAACAATCGTTTCACCCTTTTATAA 546 0.4872 MPSHHQHHADPEQPKPNPNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSLTDAFLPREINNLPNFRIAKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSNPETCQDSVVEHEGSSRFWNCFHNNNRFTLL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00294 181 SUPERFAMILY RING/U-box 83 155 - -
Mepo1g00294 181 SMART ring_2 103 144 IPR001841 -
Mepo1g00294 181 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Mepo1g00294 181 Pfam Ring finger domain 102 145 IPR001841 -
Mepo1g00294 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 155 - -
Mepo1g00294 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00294 Mepo-Chr1 2731890 2732818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00294 15 181 C3H Transcription Factor Family AT2G18670 40.476 8.69e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00294 - - pvu:PHAVU_003G150700g 187.963