Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00293 ATGGGTAGAAGTTTTGTGCCATTTCAAGGTGACAACACCTTTATGCCTCCATCACCATTAGAACAACCACCATATTATTTTCAACCACATTCACCATTTCCACCTATTACAGTTTCTACTCTAAGATCTAATAATAATAATAGTTTCAATTTTAACAATAGCACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTACAATCTTAGCTGTTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCTTTCATTGATACACTTCCAGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCACTCTACTTGTCCTCTCTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTCCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACAGCAAATTCTCATCTTGGTTGTTGTGGAGACGGTGAATTCGGAGTTGATTTGGCTTCGGTTGAAAACATTCCCGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCATATATTATGGATGAAACATCATCATTGCAGGTACCAATTAGAACTCCAATAAAGCAGCAATTGAGTAAGAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCACAGGATTGCAATGTCAGAATGTGATTGTGAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCTAGAGCTGAGGATGCTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGGAAGGAGAGTTTTTCTATATCAAAGATTTGGCTCAGAGGGAAAAAAGATAAGAAAAATGGTGATGTTGCTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGTAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGGAGGAAGTGAATTTAGTGGATATGATGAAGAAAATCAAAGCTGCTATAGTATGGATTCTCAAGCTAGAGCACCTTCATTTGCCAGAAGGACTTTGCTTTGGCTCACTGGAAGACAAAATAAGGTTGTTCATTCATCAACTACTTCAACCCTCTAG 1542 0.3787 MGRSFVPFQGDNTFMPPSPLEQPPYYFQPHSPFPPITVSTLRSNNNNSFNFNNSTLKVSPSILIIITILAVVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAPISTGSVVGRTSSVRTANSHLGCCGDGEFGVDLASVENIPDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDAVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVADSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSTTSTL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00293 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 191 IPR013083 -
Mepo1g00293 513 FunFam RING-H2 finger protein ATL46 105 191 - -
Mepo1g00293 513 SMART ring_2 144 185 IPR001841 -
Mepo1g00293 513 CDD RING-H2_EL5-like 143 186 - -
Mepo1g00293 513 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Mepo1g00293 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 399 - -
Mepo1g00293 513 SUPERFAMILY RING/U-box 138 204 - -
Mepo1g00293 513 Pfam Ring finger domain 143 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00293 Mepo-Chr1 2722246 2724268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00293 50 511 C3H Transcription Factor Family AT2G18650 45.228 4.72e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00293 - - lja:Lj4g3v2023880.1 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00293 1 2722246 2724268 Mepo1g00293 1 2722246 2724268 ECH