Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00216 ATGGGTCGTCGTAAAATTGAGATTGAGATCGTGAAAGATCCCAACACAAGGCAGGTCACATTCTCAAAACGTCGAACAGGTTTATTCAAGAAAGCAAATGAGTTGTCCATTTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTTTCTCCTGGGAATCGGCCTTACTCTTTTGGTCACCCAGGAATTGATGTTGTTGCTGCCAAGTATCTCCAACAAGAGCCTGAACCAAGTGATTCCCAAGGGAACCCCTCCTCCGATGCACCCGATATAGAAAAATTGAATCTAGAACTTGTTCAGGCCTCCTCTGATGCACCCAGTATAGAAAAATTGAATCTAGAACTTACTGAGGTGTTGGCACAAATTCAGGAAGGTGAAAAGCAGAATGAGACCCATGATGAGATTCTAAAGCAAGATAATGTGATGAAACTCTCTGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCACAATTTAGTGAAATTACGTCTTAGTGATATCGAGATATCAGAATGCATGATGCTTTTAGCTCAGGATCCGGTGGTGGGAATAAAAGAAAAATCTGCAAGAAAGAAAAGAAGAAAAAATTAA 591 0.401 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSPGNRPYSFGHPGIDVVAAKYLQQEPEPSDSQGNPSSDAPDIEKLNLELVQASSDAPSIEKLNLELTEVLAQIQEGEKQNETHDEILKQDNVMKLSELKELRDSYKELHNLVKLRLSDIEISECMMLLAQDPVVGIKEKSARKKRRKN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00216 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g00216 196 Coils Coil 107 127 - -
Mepo1g00216 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g00216 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g00216 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g00216 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mepo1g00216 196 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Mepo1g00216 196 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mepo1g00216 196 PANTHER MADS BOX PROTEIN 3 157 - -
Mepo1g00216 196 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Mepo1g00216 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00216 Mepo-Chr1 1943107 1943697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00216 1 178 Type I MADS-box Gene Family AT2G34440 42.162 2.90e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g00216 SRF-TF 9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00216 - - mtr:11439559 362.844