Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00168 ATGATGCAACCAGGAGGACCAGGTATGCCACCACCCAACTTGGCTCAACAATTCCATCAACAAGTACAACAGCAGCATCAACAACAACCACCCTACATGATGATGCCTCCTCATCAGCCTCAACCACAAACCCAACCTCCTCAGATGTGGGCCCCTAACGCCCAGCCTCCTCAACAATCGGCGGTTCCTCCTCCTACCAACGCCGATGAAGTCCGTACTCTCTGGATCGGTGATTTGCAATATTGGATGGACGAGAATTATCTTTATAACTGTTTCTCTCACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGTAATAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTATTAGCCGTGCTGGTGCTGAGAGAGTACTTCAAACTTATAATGGCACCATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCATGATGATTCTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCTGATGTTAGTGATCATCATTTGACCGAAGTGTTTAGAACTCGGTATAATTCAGTTAAGGGTGCGAAAGTTGTAATTGACAGGACCACTGGTAGGACAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAGAGTGAACAAATGAGGGCTATGTCTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTGGCACACAGACTTCAAAAGCTTCTTATCAGAATCCACAAGGGGGGGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGAACATTTGAAACAAGTTTTTACTCAGTATGGTGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGTTCCGCTGAGGAAGCACTTCGGGTTTTAAATGGTACACTTCTTGGTGGACAAAATGTCCGGCTTTCATGGGGACGAAGCCCGGCAAACAAACAGACCCAACAAGATCCAAACCAGTGGAATGGTAGTAGTGGTTACTTTGGCGGATATGCCCAAGGTTATGAAAATTATGCTTATGCCCCACCTGCTGGACAAGACCCCAATATGTATGGCAGCTATCCGGCGGGGTATGCAAGTTACCAACCTCCTCAGCAGCAACAGCAATTAGGATATAGTTAA 1230 0.4472 MMQPGGPGMPPPNLAQQFHQQVQQQHQQQPPYMMMPPHQPQPQTQPPQMWAPNAQPPQQSAVPPPTNADEVRTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTYNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMSEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSGYFGGYAQGYENYAYAPPAGQDPNMYGSYPAGYASYQPPQQQQQLGYS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00168 409 MobiDBLite consensus disorder prediction 236 273 - -
Mepo1g00168 409 SUPERFAMILY RNA-binding domain, RBD 32 154 IPR035979 GO:0003676
Mepo1g00168 409 MobiDBLite consensus disorder prediction 395 409 - -
Mepo1g00168 409 Gene3D - 248 376 IPR012677 -
Mepo1g00168 409 Gene3D - 164 240 IPR012677 -
Mepo1g00168 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 152 IPR000504 GO:0003723
Mepo1g00168 409 FunFam Polyadenylate-binding protein RBP45C 249 378 - -
Mepo1g00168 409 MobiDBLite consensus disorder prediction 1 68 - -
Mepo1g00168 409 MobiDBLite consensus disorder prediction 14 32 - -
Mepo1g00168 409 Gene3D - 11 159 IPR012677 -
Mepo1g00168 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 344 IPR000504 GO:0003723
Mepo1g00168 409 MobiDBLite consensus disorder prediction 342 361 - -
Mepo1g00168 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 244 IPR000504 GO:0003723
Mepo1g00168 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 139 IPR000504 GO:0003723
Mepo1g00168 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Mepo1g00168 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 337 IPR000504 GO:0003723
Mepo1g00168 409 MobiDBLite consensus disorder prediction 239 273 - -
Mepo1g00168 409 SMART rrm1_1 273 340 IPR000504 GO:0003723
Mepo1g00168 409 SMART rrm1_1 73 148 IPR000504 GO:0003723
Mepo1g00168 409 SMART rrm1_1 166 240 IPR000504 GO:0003723
Mepo1g00168 409 CDD RRM1_SECp43_like 73 153 - -
Mepo1g00168 409 CDD RRM2_SECp43_like 164 243 - -
Mepo1g00168 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 348 - -
Mepo1g00168 409 SUPERFAMILY RNA-binding domain, RBD 259 371 IPR035979 GO:0003676
Mepo1g00168 409 FunFam Polyadenylate-binding protein RBP45 11 156 - -
Mepo1g00168 409 MobiDBLite consensus disorder prediction 33 63 - -
Mepo1g00168 409 MobiDBLite consensus disorder prediction 387 409 - -
Mepo1g00168 409 FunFam Polyadenylate-binding protein RBP45C 157 248 - -
Mepo1g00168 409 SUPERFAMILY RNA-binding domain, RBD 158 262 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00168 Mepo-Chr1 1474729 1479049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00168 71 351 Eukaryotic Initiation Factors Gene Family AT2G23350 27.273 2.33e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00168 - - gmx:100796848 604.749