Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00124 ATGATAATGCTTCCTGATGTCCAAAACTCACATATGGAAGAACTTATTTGTGTTGAAAATCGTCAAGATGACATTTTCAAATTTGATGAAGAACTCATTGATGTTCAATGCGAAACATCACAAAACAACAATAGAGAAGAAGCAGAACTATCATTTTCTGAATGGTTGGAGATGGATGAGTCTCTGGCTGTGTGGTTCGAGTGGAAAGAGAATTGGCATGCAGGAATCAAATGTGCAAGGGCTGATTGGCCATTACCAACTATAAAAGCCAAACCAACTAATGATAATGAGCAGAACAAATATATTGTCATTTTTTCGCCAGAAACAAGGAATTATTCATGGGTTAATATGCTTCTTGTTAAATCAATTGATGAGTTTCCTCAACCTATACCATATGAAACTCATCATGAAGGATTGAAAATGGTACAAGACTTGACGATTGCGCGACAATTTATAATGCAAAAGCTCGCTGTCGAAATGCTCTACATTATTAATCAGTTTCATTTTAATGCTTTGATAGAAGCAGTTCGTAATGTGATGGTTTGGAAGCAGTTTGCTATGGAAGCTTCTCATTGTCGTCGTTATTTAGATCTTGGAATAATGGTTCAGAGGTTGCAAAAGAACATAATGCATTGCTACATAAAAGATTATTGGAAACTACATTCATCTGATTCTTGGGCTGAAAGATGCCAAAGTGCAAACAATGCTCAAACAGTAGAGCTGCTTCAGGAGTTTTCCACATTTCTTTCCTTTTCTAGTAGCAGTGACACGCAACAGCATGCTTCTGGCTCTGATGGTATGCACCAAGCAAGCCTTCAAGTTGGCAGCAAAAGGCCTAAACTTAAAGTTCATCGCGCATATACACATTCTAGACAAGAAGGTATTGTGGAGGTACCCATGGTAACTGAGTTTCCTAGTCAACTGATCAGCCCAGTGAGCGCAGTTCGGTCTGTAGATTCTGAGATCTTGTTTAGCCAAGGAACAATATCAAGGCCTTTGGATGAAATGGTTGTTCAAATATCTGGAGAAAATGATACTAAGAATGGTATTGTGGATCGCCGATGCCAAGCATATGTCAAATCCAAGGGAAGGCAATGTTTAAGAATGGCGATGCGTAATGATATATATTGTTATGCTCATTGTTCAATCAAACAAGAAAAATGTGTTAAAGTTATTACCCCAATTTGTGGAGGAACAACCATCGGTGGTTCTAGATGTAAGAATCATTCTGGCTCTGATGGTTTGAACCAAGTATGCCTTCCAGTTGGCAGCAAAAGGCCTAAACTTAAAGTTCATCGCGCATATACACATTCTAGACAAGAAGGTACTGTGGAGGTACCCATGGTAACTGAGTTTCCTAATCAATTGATCAGCCCAGTGAGTGAAACTGTAGTTCAGTCTGTAGATTCTGAGATCTTGTTCAGCAAAGGAACAATATCAAGGCCTTTGAATGAAACGGTTGTTCAAGTATCTGTAGAACAAGATACTAAGGATGGCATTGTAGAACGCCGATGCCAAGCATATGTCAACTCCATGGGAAGGCAATGTTTAAGAATGGCGATTCGTAACAATATATATTGTTGCGCGCATTTTTCAATTAAAAAAGAAAAATGTGTTAAAGTTCTTACTCCAATTTGTGGAGGAACAACCATCGCTGGTTCAAGATGTAAGAATCATTCTCTTCCCAACTTATCCTTTTGCAGGAAACATCTGCCCAATGTTTACAGAAACAAGCCCTCAAATTCAAATTGTAGTACATTGAAGAGGAAATCAGAAGAAACTTGCAGTCGTTCGAAGATCCGGATTTGCAATGATTCAATATTGGTACATTCGAGAATTCCACTGGAGATCGATACAAAGATGGTAATCGATGATGAAGATGAATCCTTCTGCTTATTTAGATGTTATGCTTGTGCCCTTTGTTTTGAGTCCTTCACTCACAAGAAACTATTGGAATCACATGTTCTGAAGGAACATCCTGTGAATTTTGGTGAACACTTATTTCTTTTAAAATGTATTCCTTGTGGTGACCAGTTTGGAACTATGGAGAAATTAAGGTTGCATGTTAAGTCAGTTCACCCTGCCGAACTTAAGCTTTCAAAATATTCTTTGAAAATGATTGAGAAGGCAAATGAGATGGGGGAAACATCCATGCATCAGTCTCATGTAAACGAAAAATCTACAATTGCATCAGATCCTGCAAGTGTTGTAATGGAGCAAGATTAG 2226 0.3827 MIMLPDVQNSHMEELICVENRQDDIFKFDEELIDVQCETSQNNNREEAELSFSEWLEMDESLAVWFEWKENWHAGIKCARADWPLPTIKAKPTNDNEQNKYIVIFSPETRNYSWVNMLLVKSIDEFPQPIPYETHHEGLKMVQDLTIARQFIMQKLAVEMLYIINQFHFNALIEAVRNVMVWKQFAMEASHCRRYLDLGIMVQRLQKNIMHCYIKDYWKLHSSDSWAERCQSANNAQTVELLQEFSTFLSFSSSSDTQQHASGSDGMHQASLQVGSKRPKLKVHRAYTHSRQEGIVEVPMVTEFPSQLISPVSAVRSVDSEILFSQGTISRPLDEMVVQISGENDTKNGIVDRRCQAYVKSKGRQCLRMAMRNDIYCYAHCSIKQEKCVKVITPICGGTTIGGSRCKNHSGSDGLNQVCLPVGSKRPKLKVHRAYTHSRQEGTVEVPMVTEFPNQLISPVSETVVQSVDSEILFSKGTISRPLNETVVQVSVEQDTKDGIVERRCQAYVNSMGRQCLRMAIRNNIYCCAHFSIKKEKCVKVLTPICGGTTIAGSRCKNHSLPNLSFCRKHLPNVYRNKPSNSNCSTLKRKSEETCSRSKIRICNDSILVHSRIPLEIDTKMVIDDEDESFCLFRCYACALCFESFTHKKLLESHVLKEHPVNFGEHLFLLKCIPCGDQFGTMEKLRLHVKSVHPAELKLSKYSLKMIEKANEMGETSMHQSHVNEKSTIASDPASVVMEQD 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00124 741 SMART c2h2final6 670 693 IPR013087 -
Mepo1g00124 741 SMART c2h2final6 636 659 IPR013087 -
Mepo1g00124 741 Gene3D Classic Zinc Finger 634 726 - -
Mepo1g00124 741 MobiDBLite consensus disorder prediction 715 735 - -
Mepo1g00124 741 Pfam Zinc finger C2H2-type, 3 repeats 638 721 IPR040689 -
Mepo1g00124 741 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 626 724 - -
Mepo1g00124 741 MobiDBLite consensus disorder prediction 715 741 - -
Mepo1g00124 741 ProSitePatterns Zinc finger C2H2 type domain signature. 672 693 IPR013087 -
Mepo1g00124 741 ProSiteProfiles Zinc finger C2H2 type domain profile. 670 698 IPR013087 -
Mepo1g00124 741 ProSitePatterns Zinc finger C2H2 type domain signature. 638 659 IPR013087 -
Mepo1g00124 741 ProSiteProfiles Zinc finger C2H2 type domain profile. 636 659 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00124 Mepo-Chr1 1060798 1063954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00124 619 698 C2H2 Transcription Factor Family AT2G23740 48.750 1.67e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g00124 zf-C2H2_3rep 5.9e-22 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00124 - - mtr:11444185 657.521