Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00118 ATGAGTCAACTCGGTCTCATATTGCAGGAATCTCTGCGTTCTCAGAGAGAATCAAGAACCATTCTCGGTTTATTAACCGAACAAATGGATGGTTTAGATTCAGGAACCACCAGAAGACGTAGTCTCAAAGAACGTTTCAGATTCACCGGTATGGGTTGCTGTGGTGCCACCTGGGTTTTCCGTCCAATTATCCGCCACGAACATCATCATCAACAACAACAACAAAACGAAGAAGCAGAAGCTACGGTGGCACAACAACAACAATTACAGGTTCAAGATCAAGATCCGAACCCGGTTGAACCGGAATGTGAAGCTCCGGCGGGTTCGTCTGGTTCTGGAATGAATCTAGCGGCGGCGTTGGCGGCGGAGCGACAAATGAGGGTATCGGAGGAGACCGGTGGCAGAGAAGGAGCGACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAGGAAACAGAAGGTGAAAATGAGAGTAATGCTGCTGCGGTGGTTGTGGAAGGGAGTGATTCACTGTGCTGCGTGTGCATGGGAAGAAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGCAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTTGACATTTTCTGA 663 0.4827 MSQLGLILQESLRSQRESRTILGLLTEQMDGLDSGTTRRRSLKERFRFTGMGCCGATWVFRPIIRHEHHHQQQQQNEEAEATVAQQQQLQVQDQDPNPVEPECEAPAGSSGSGMNLAAALAAERQMRVSEETGGREGATPWRVSLMKLLEETEGENESNAAAVVVEGSDSLCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00118 220 Coils Coil 69 89 - -
Mepo1g00118 220 CDD RING-HC 172 209 - -
Mepo1g00118 220 Pfam Zinc finger, C3HC4 type (RING finger) 169 214 - -
Mepo1g00118 220 PANTHER OS01G0917900 PROTEIN 6 220 - -
Mepo1g00118 220 SMART ring_2 172 209 IPR001841 -
Mepo1g00118 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 219 IPR013083 -
Mepo1g00118 220 SUPERFAMILY RING/U-box 166 217 - -
Mepo1g00118 220 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Mepo1g00118 220 MobiDBLite consensus disorder prediction 76 95 - -
Mepo1g00118 220 MobiDBLite consensus disorder prediction 69 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00118 Mepo-Chr1 1012717 1014033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00118 21 220 C3H Transcription Factor Family AT4G22250 50.718 2.56e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00118 - - mtr:11446421 379.022