Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00116 ATGGGGAAATCAGGTGGTAGAAGAAAGAAGGGTGGTGCTGTTGTTGACAATTCAGCTTCTGTCCAAACACCAAATGGTGGGGTTGAATTGGATTCATCAATTTTCTTGAAGAAGGCACATGAAATGAAAGAAGAAGGGAATAGAAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAAAACTATGAGAATGCTCTGAAACTCACGCCCAAAACACATCCTGATAGGGCTGTTTTTCACAGCAATAGGGCTGCTTGTATGATGCAAATGAAACCTATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCTCAATTTGTCCGGGCTTTGCTTCGTAGGGCTCGGGCTTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTTCAAGATGTGCAGTTGTTATTGGCTTCTGATCCAAATCATAAGGATGCTTTGGATATTGCTCAGAGATTGAGGGCTGCGTTTGGGCCTCGTCAGGAAGCACAGCAGGATCTCCACAGCCGCCCTTCTCCTGCTGCGCTAGGTGCTTCTGCTGTCCGTGGTGCTCCTATTGCTGGATTAGGTCCATGTTTGCCAGCACGGCCTGCGTCGAAGAAGGGGGTGAATTCTGCCGTTGGATCAGTTGTTTCTCCCAATAACAAGGTTGACAAGTCTCTAAATGTTCTGCTGCCAACTGAAAATGGTCCAGAGAACAAGACCCAGATGCCGAAAGTTGTGTTGAAGCCTTTTAATAATGGTCCTGCTGTGCAATCCAACTCGAAAAATGAGAGCCAAAAGGATAGGAATCTGTCGGAGGTTGCTATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTCAGATGCCGGTGAACTGCAGTTTCAGAGTACTTAGAGATGTGGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACATCTACTGATGAACTCAGATTGGCAGAGTCGTTTGTCGATAGCAATGCACTGAAAGAACTTGAATCAGATAAAAGTGATTCTATTTCGGTGCTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAAAAACTTGTTGAGAATGAAGTGACCAAGGGAGATGAGAGTGGATCTCATTCTTCCCTCGGTGACTCTGTCCCTGAAGTTACTGAAGTCACCGAAGTCACTGAAGTTCCTGATTCTGAGGCTGATAAGGTAGTAACAAAGAAGGATGTTTCAAAGGAAAAACCAGGAGCAACAGGAGATAATGAATGCAAAGAAGTGGAGATGGATGATTGGCTCTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCTGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTATGTTCAGAGGCACTTGAAGAAACAGTGACAAGTGAGGAGGCTCAGGATCTATTTGATAAGGCTGCTTCAAAGTTCCAGGAGGTGGCAGCATTGGCATTCTTCAATTGGGGTAATGTTCACATGTGCGCTGCTAGGAAGCGAATTCCCCTAGATGAGTCAGCTGGTAAAGATGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGAGAAGTATTCTTTGGCACGAGAGAAGTATGAGGAAGCACTCTTGATCAAACCTGATTTCTATGAGGGACTGTTGGCTCTGGGTCAGCAACAATTTGAAATGGCCAAGCTTCATTGGTCTTTTGCAATTGCTAAGAAGATAGACCTATCAACATGGGATCCAACAGAAACTCTTCAACTGTTTAACAGTGCAGAGGAGAAGATGAAATCTGCAACTGATATGTGGGAGAAGTTAGAGGAACAGAGGGCAAAGGAGCTAAAGGACCCAACTGCAACAAAGAAAGAAGAATTGTTGAGAAGAAGAAAGAAACAGGGAAGTGCTACTGAAGGCGAGTCTTCTGTCGTTGGAGGTCAGGGTGAGATATCTGCTGAAGAAGCTGCTGAGCAAGCAGTGGTCATGAGATCACAAATTCATCTTTTTTGGGGCAATATGCTTTTTGAAAAATCCCAAGTGGAATGCAAATTAGGAATGAATGGTTGGAAGAAAAACCTGGATGCTGCAACAGAGCGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTTGATGGTTCTAAAGAATCATAGCTCAAACGGTGATACAAAAGGTGATGATAAAAAGGTCCAGAGCCCACTTTCCAACAAGACTGATGAACTAGAGATCAACAAGGAGGCCAATCAAGTATGA 2319 0.4398 MGKSGGRRKKGGAVVDNSASVQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALENYENALKLTPKTHPDRAVFHSNRAACMMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGVNSAVGSVVSPNNKVDKSLNVLLPTENGPENKTQMPKVVLKPFNNGPAVQSNSKNESQKDRNLSEVAIRWRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSNALKELESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEVTKGDESGSHSSLGDSVPEVTEVTEVTEVPDSEADKVVTKKDVSKEKPGATGDNECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLSTWDPTETLQLFNSAEEKMKSATDMWEKLEEQRAKELKDPTATKKEELLRRRKKQGSATEGESSVVGGQGEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMNGWKKNLDAATERFKLAGASEADILMVLKNHSSNGDTKGDDKKVQSPLSNKTDELEINKEANQV 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00116 772 CDD PB1 278 364 - -
Mepo1g00116 772 MobiDBLite consensus disorder prediction 632 658 - -
Mepo1g00116 772 MobiDBLite consensus disorder prediction 742 766 - -
Mepo1g00116 772 ProSiteProfiles PB1 domain profile. 275 367 IPR000270 GO:0005515
Mepo1g00116 772 Coils Coil 612 632 - -
Mepo1g00116 772 Gene3D Tetratricopeptide repeat domain 36 160 IPR011990 GO:0005515
Mepo1g00116 772 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Mepo1g00116 772 PANTHER PROTEIN CLMP1 1 770 IPR044517 -
Mepo1g00116 772 SMART tpr_5 39 72 IPR019734 GO:0005515
Mepo1g00116 772 SMART tpr_5 113 146 IPR019734 GO:0005515
Mepo1g00116 772 SMART tpr_5 77 112 IPR019734 GO:0005515
Mepo1g00116 772 MobiDBLite consensus disorder prediction 632 671 - -
Mepo1g00116 772 SUPERFAMILY CAD & PB1 domains 273 339 - -
Mepo1g00116 772 MobiDBLite consensus disorder prediction 422 442 - -
Mepo1g00116 772 MobiDBLite consensus disorder prediction 1 26 - -
Mepo1g00116 772 SMART PB1_new 275 367 IPR000270 GO:0005515
Mepo1g00116 772 MobiDBLite consensus disorder prediction 371 408 - -
Mepo1g00116 772 Pfam PB1 domain 275 366 IPR000270 GO:0005515
Mepo1g00116 772 SUPERFAMILY TPR-like 463 588 IPR011990 GO:0005515
Mepo1g00116 772 SUPERFAMILY TPR-like 36 170 IPR011990 GO:0005515
Mepo1g00116 772 MobiDBLite consensus disorder prediction 739 772 - -
Mepo1g00116 772 Gene3D - 277 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00116 Mepo-Chr1 998363 1001274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00116 36 157 Calmodulin-binding Proteins AT3G25230 30.075 6.26e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00116 K26538 - gmx:100786963 1167.91