Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00096 ATGACTCCGATCGAAAGCCCTAACCTTTTTCAACAACAACAACAAAATCGTTCTTCGTCCAAACGAAAATTAGACGAAGACGACGGAAACAACGCGTTAGATGATGACTTAGTCTATGTAAGAATGAGAAAAGACGAAACCACAAAAACAACTCTTCATTCTTCATGGACCGGCGGCGGTGGTGGTTCTAGCGGCGGCGATGGTGGTGGTGCTTTCTCTAAGAAAAAATCACCTATTCATTTCTTCATTCGAATGATGTCAAAAGGATACAACGTTGTTATACACGCTTATCCAGAAGAAACAGTGAAATCAATTCACCAACGAATTGAAGAAATGAAGGGAATTCCTCTTTTTGAACAGAGGTTGATTTTCAATGGTAAACAGCTTCAGTGGGAACAAACACTCGCGGAGTGTGGAATTCAAAACGACGCCAATCTACACCTAGTTGGTCGAATGCGTAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTATTGTTTATGATCTTTGTCATGGTGTTAATCTTCCTGACGCTGTTAAATCTATTAAGAGTTTGCTTACTACTTATATTAATTTGGCTTTGGCACCTAAACCTAAACTTGATGCTGATTCTGCTACTAGTTATTTTCAGATTTTCATGAATTCTTCCGCCATTTCGGTTCTTGTTACGTTGTATGTTTCCCCTTACACGGGGAATAAGGCGTGTTCTGATACTTGTATTAAGCATTTTTTGAATGGTTGTAAAACCTCATTGTCCAAGACCTTTCATACGCAGGCTGCACGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGTAGAGTTGGGACTCATGATCCTTTATATCTTTTTTGTCGAAGTAGTTTGGGGGGTTTTTTGGAAGCGGCTGAAATTTCACTTGCAGCGTCTGAGGATGAGAATCACAAAGGGTTGGTGTTGGTTCAGGATTTGTTTCCGTTTGTTCGTGAACTTGCTGATAGTTTGTTGAAAAATTTGGATTTGAGCTTGGAATCCCCTTCCCTTGCCTGTCCTTTGCCGAGCAATGTTGAGGATTTTCAAGCCTTTTTAGTCCCTGTGAGGACTGGAATCGAGCAGCAACAGGCTCTCCGTGGTTGTGTTGCTTACCACCAGCAGCAGGACAAGAACAAGAATGGATTGGTTGCTGAAGAGATTGAATACCTTCGTCTGTTGTACGATCAGTTGTTGTCCAAAATTGATACTTGCCTTCAAAAAATGGACAAGAGATTCACTGACAAGGAAATGGTGTTTGAGGAAAATTATTTTTATCCTGCGTGCTCTCTCTATCTTTCAATTTTGAAGGAATTGCATAAGATTTCTAAGCTTTATGATGGTGCTACAGAAGAGCTCTGTCATGTTTTGATGCGTCGAAAGAGTGTAATGTGTCTGATCATCGTTAAATATGCAAAGAGGGCCGACGAGCACCAGTGGATTCTTGAGTACAAGAATGTCACCAATTTCGAGGCTAGGAGGCATTTAGCCATGATGATATTCCCGGAGGTGAAAGAAGACTATGAGGAGTTGCATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTTGAATACATTGCACGGGCTGATCCCGAATCACTGCGTGGTGGACTGTTTATGGAATTCAAAAATGAAGAAGCCACTGGCCCCGGTGTGCTGAGGGAGTGGTTTCTTTTGGTTTGTCAAGCACTTTTCAATCAGGAACATGCTCTTTTTGTTGCCTGCCCAAAAGATCGAACAAGATTTCTCCCCAATTCTGCTTCCAAGGTACAACATAATCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTTGGTATTGTTTTTGATCGCGTGTTTTTCTTGCAATTGGCTGGAAAGCCTATTACTTTAGAAGACATAAGGGATGCAGATCCTGACCTATATAGAAGCTGCAAGCAAATATTGGACATGGATTCTGATTTCATTGATTCCGATGCATTAGGACTGACGTTTATTAGAGAAGTGGAGGAATTAGGACAGAGGAAAGCGATCCAGCTGTGTCCTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACATCCATAGCTGAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGAGATTCTTTCAAGTTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGTCTGAAGATCTTGATTGGATGTTGCGTGGGAGTGAAGATGCCATTTCCGTCGAAGATTGGAAAGCACACACTGAGTATAATGGCTATAAAGACACAGATATTCAGATATCTTGGTTTTGGGAGATAGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTTCGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAATCTGGCGATCGTCTTCCTTCATCTCATACATGCTTTTATCGGCTGTGTTTCCCAGCTTATTCATCTATGCCTGTCATGCAAGCTCGTCTTAAAGTCATTACCCAAGAACATATTGGCTCTAGTTTTGGTACTTGGTGA 2643 0.412 MTPIESPNLFQQQQQNRSSSKRKLDEDDGNNALDDDLVYVRMRKDETTKTTLHSSWTGGGGGSSGGDGGGAFSKKKSPIHFFIRMMSKGYNVVIHAYPEETVKSIHQRIEEMKGIPLFEQRLIFNGKQLQWEQTLAECGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINLALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTGNKACSDTCIKHFLNGCKTSLSKTFHTQAARVALEFCKLLSRVGTHDPLYLFCRSSLGGFLEAAEISLAASEDENHKGLVLVQDLFPFVRELADSLLKNLDLSLESPSLACPLPSNVEDFQAFLVPVRTGIEQQQALRGCVAYHQQQDKNKNGLVAEEIEYLRLLYDQLLSKIDTCLQKMDKRFTDKEMVFEENYFYPACSLYLSILKELHKISKLYDGATEELCHVLMRRKSVMCLIIVKYAKRADEHQWILEYKNVTNFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRGGLFMEFKNEEATGPGVLREWFLLVCQALFNQEHALFVACPKDRTRFLPNSASKVQHNLHLEYFSFCGRVIALALMHKVQVGIVFDRVFFLQLAGKPITLEDIRDADPDLYRSCKQILDMDSDFIDSDALGLTFIREVEELGQRKAIQLCPGGKNIVVNSKNRVKYVDLLIKDRFVTSIAEQVSHFAKGFAEILSSSKLQQFFFQSLESEDLDWMLRGSEDAISVEDWKAHTEYNGYKDTDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFRGLGSRLHIYKSHESGDRLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHIGSSFGTW 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00096 880 MobiDBLite consensus disorder prediction 49 70 - -
Mepo1g00096 880 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 640 722 - -
Mepo1g00096 880 Gene3D Hect, E3 ligase catalytic domain 640 722 - -
Mepo1g00096 880 PRINTS Ubiquitin signature 132 153 IPR019956 -
Mepo1g00096 880 PRINTS Ubiquitin signature 111 131 IPR019956 -
Mepo1g00096 880 PRINTS Ubiquitin signature 90 110 IPR019956 -
Mepo1g00096 880 Gene3D Hect, E3 ligase catalytic domain 763 879 - -
Mepo1g00096 880 ProSiteProfiles HECT domain profile. 539 880 IPR000569 GO:0004842
Mepo1g00096 880 SUPERFAMILY Hect, E3 ligase catalytic domain 514 866 IPR035983 GO:0004842
Mepo1g00096 880 Gene3D - 72 167 - -
Mepo1g00096 880 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 72 167 - -
Mepo1g00096 880 Pfam Ubiquitin family 82 153 IPR000626 GO:0005515
Mepo1g00096 880 SUPERFAMILY Ubiquitin-like 80 167 IPR029071 -
Mepo1g00096 880 FunFam E3 ubiquitin-protein ligase UPL5 764 879 - -
Mepo1g00096 880 Pfam HECT-domain (ubiquitin-transferase) 568 872 IPR000569 GO:0004842
Mepo1g00096 880 SMART hect_3 537 878 IPR000569 GO:0004842
Mepo1g00096 880 ProSiteProfiles Ubiquitin domain profile. 79 155 IPR000626 GO:0005515
Mepo1g00096 880 SMART ubq_7 79 151 IPR000626 GO:0005515
Mepo1g00096 880 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 79 878 - -
Mepo1g00096 880 MobiDBLite consensus disorder prediction 1 18 - -
Mepo1g00096 880 Gene3D Hect, E3 ligase catalytic domains 519 752 - -
Mepo1g00096 880 MobiDBLite consensus disorder prediction 1 30 - -
Mepo1g00096 880 CDD HECTc 518 878 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00096 Mepo-Chr1 845765 851752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00096 79 154 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 35.526 1.53e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00096 - - gmx:100789233 1212.21