Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00060 ATGAGTTGTTTTTCTTGCTTCGGTTATCTTTGCAACAAAAATGTTGACAATACTTCCGCTACTGCAGAGGGAAAGTTTGAGAGTGTGAGTAGTGGTGACAGCAACACGTCAACAACTAGTTTTAGTTTTGATGAGCTTGTAATTGGGACCGAAAATTTTAAGGAATTGCTGGGGGTAGGTGGTTTTGGAAGTGTTTACAAGGGTCGTCTTCCAAACGGCGAGATTGTTGCGGTAAAACAGTTAAATCCTGATGGATGTCAAGGTTGTCGTGAATTTATGACAAAGCTTGATATTCTAAGCGTGCTGCGTCATTCTAATCTTGTTAAGTTAATTGGTTATTGCACCAATGGAGATCAGATGCTTTTGGTTTATGAATACATGCCTAAGGGATGTCTTGAAGCTCATCTTTTTGATGTTACCCAATACAAAGAACCATTAAGTTGGAGCACTCGAATAAAGATTGCTCTTGGAGCAGCTCAAGGTCTTGAGTATCTCCACTGTCAAGTGGATCCACCGGTTATCCATCGAGATTTGAAATCTTCAAACATTTTACTTGAAAATGACTTCAGTGCAAAACTGTCGGATTTCAAACTTGCTAAACTTGGACCAGTTGGAGACGACACACATGTTTCAACCCGAGTGATGGGTACTGAAGGCTATTGCGCACTGGACTATGCTATGATTGGCAAATTAACTAAACAATCCGATATCTACAATTTTGGTGTGGTTTTGCTGGAACTGATCACCGGACGTAGAGCCCTGGATACTAGTAGGGAAGCAAGAGAGCAATACTTAGTTTCATGGATCTTCACTCCTAGTGCTTATGAAGCACGTGATTTCGTCATAGATCAGATGTTCAATCAGAAGGGAGAGGTAAAGGATTATCAAATTACATCGATTCATCTTGACACATTCCTTGTTAAATGTTCGGTTGAAATTGCAGCTTCTTGCAACATTGATTCAAGAAGGTCAAACAAAGATGATGAAAATGTTACAAGTAAACAACAACCATCAGTTACAATTCGACCTCGCATTCAGATCCACCGCCATTCAGATCTACCACCGTAA 1068 0.4017 MSCFSCFGYLCNKNVDNTSATAEGKFESVSSGDSNTSTTSFSFDELVIGTENFKELLGVGGFGSVYKGRLPNGEIVAVKQLNPDGCQGCREFMTKLDILSVLRHSNLVKLIGYCTNGDQMLLVYEYMPKGCLEAHLFDVTQYKEPLSWSTRIKIALGAAQGLEYLHCQVDPPVIHRDLKSSNILLENDFSAKLSDFKLAKLGPVGDDTHVSTRVMGTEGYCALDYAMIGKLTKQSDIYNFGVVLLELITGRRALDTSREAREQYLVSWIFTPSAYEARDFVIDQMFNQKGEVKDYQITSIHLDTFLVKCSVEIAASCNIDSRRSNKDDENVTSKQQPSVTIRPRIQIHRHSDLPP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00060 355 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Mepo1g00060 355 Pfam Protein tyrosine and serine/threonine kinase 53 253 IPR001245 GO:0004672|GO:0006468
Mepo1g00060 355 ProSiteProfiles Protein kinase domain profile. 51 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g00060 355 FunFam serine/threonine-protein kinase PBS1-like 20 126 - -
Mepo1g00060 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Mepo1g00060 355 Gene3D Transferase(Phosphotransferase) domain 1 127 320 - -
Mepo1g00060 355 SUPERFAMILY Protein kinase-like (PK-like) 29 277 IPR011009 -
Mepo1g00060 355 PANTHER OS07G0668900 PROTEIN 27 286 - -
Mepo1g00060 355 SMART serkin_6 51 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g00060 355 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Mepo1g00060 355 MobiDBLite consensus disorder prediction 323 355 - -
Mepo1g00060 355 FunFam Os07g0541700 protein 127 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00060 Mepo-Chr1 557144 561372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00060 1 290 Glycoside Hydrolase AT3G07070 50.926 5.28e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mepo1g00060 PK_Tyr_Ser-Thr 2.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00060 - - aip:107607467 339.347