Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00054 ATGGCAGAATCAGATGATGATTCAGGTGGTCAAGCTTCAAGGAGCAGAGAATTACTGCAAGAAAGGCTCCTTCCTATAGCAAACGTGGGTAGGATCATGAAGAAAGCGTTACCGGCGAGAGCGAAGATATCGAAAGAAGCTAAGGAAACGATGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATAACAGGTGAAGCATCTGAAAAGTGTCAGAAAGAGAAGAGGAAGACAATAAACGGTGATGATCTTGTGTGGGCCATGACTACACTTGGCTTTGAAGAATATGCAGAGCCTCTTAAGGGTTACCTTCTCAAGTATAGGGAAATTGAAGGAGACAAGAATTTTTCTATGAATATGATTGGTAGTAGTAAGGAGCAGAAAGGTAGTATTGATCGATTCTTCCAAGGTTGA 411 0.4161 MAESDDDSGGQASRSRELLQERLLPIANVGRIMKKALPARAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKGYLLKYREIEGDKNFSMNMIGSSKEQKGSIDRFFQG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00054 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo1g00054 136 SUPERFAMILY Histone-fold 20 115 IPR009072 GO:0046982
Mepo1g00054 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Mepo1g00054 136 FunFam Nuclear transcription factor Y subunit B-3 11 133 - -
Mepo1g00054 136 Gene3D Histone, subunit A 11 132 IPR009072 GO:0046982
Mepo1g00054 136 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo1g00054 136 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Mepo1g00054 136 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Mepo1g00054 136 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00054 Mepo-Chr1 494303 494906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00054 1 113 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.068 1.46e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo1g00054 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00054 K08065 - apan:127265955 186.037