Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00050 ATGGAAACTGGAGGAGGGTTTCATGGCTACCGCAAACTCCCTACCAACACCAATTCTGCAGGGACGTTGAAGCTATCAGTTTCTGAGATGAACACAAGGCAGCAAGTAGGAGAACAGAACAACAACAACAACAACAACAGCCACTCATTAGCTGGAACAGAACAAGACAATGAATGCATTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGCAAGATTCTACCACCACATGCAAAAATCTCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCTGAGTACATCAGCTTCATAACTGGAGAAGCCAATGAACGTTGTCAAAGAGAGCAAAGGAAGACAATAACTGCAGAAGATGTGCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTAACAATGTATCTTCATCGTTACCGTGAGCTTGAAGGTGATCGTACCTCAATGAGAGTTGAACCATTGGGAAAGAGAGGTATGGAATATGGAAATTTAGGGGGGTTTGTCCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCACCAACCTATATGATGAGGGATGGTAATAATAATAATGCACCAAATGCTGCTGGAGGCTCATCTCATTCTCAGGCACTTGCAAATGCTGAAGCCAATGGTCATCATCATCACCATCAATATAAATGA 711 0.4205 METGGGFHGYRKLPTNTNSAGTLKLSVSEMNTRQQVGEQNNNNNNNSHSLAGTEQDNECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMEYGNLGGFVPQFHIGHPNGGYYGNAPTYMMRDGNNNNAPNAAGGSSHSQALANAEANGHHHHHQYK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00050 236 FunFam Nuclear transcription factor Y subunit B-6 56 172 - -
Mepo1g00050 236 Gene3D Histone, subunit A 55 172 IPR009072 GO:0046982
Mepo1g00050 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 218 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo1g00050 236 MobiDBLite consensus disorder prediction 33 54 - -
Mepo1g00050 236 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Mepo1g00050 236 PRINTS CCAAT-binding transcription factor subunit A signature 133 151 - -
Mepo1g00050 236 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Mepo1g00050 236 MobiDBLite consensus disorder prediction 1 20 - -
Mepo1g00050 236 ProSitePatterns NF-YB/HAP3 subunit signature. 98 114 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo1g00050 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 67 131 IPR003958 -
Mepo1g00050 236 SUPERFAMILY Histone-fold 64 161 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00050 Mepo-Chr1 434649 437224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00050 5 200 CCAAT-HAP3 Transcription Factor Family AT5G47670 58.525 7.76e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo1g00050 CBFD_NFYB_HMF 7.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00050 K08065 - gmx:100800011 289.271