Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00041 ATGAAACGTCCTACCGATGAATTGGCCACCGCCATCCCCAAACCAGTTTTCCTCACCAAAGCCCAACGTGAACAACAAGCACTCCAACGCCGCCACAACCAAGTCGCCGGTCACAAACGCGACCAAGAAGAACTTCTCCTTTCCACTAATAACAACAACAACAACAACCGCTCCTCCGATCCCAAACCCTCTGATTCCGACCGCCGTGATCGTGACCGTGACCGTGGTCACGATCGAGACAGTTACAGAGAACGTGACAGAGACAGAGACAGAGACAGAGAAAGAGAAAGAGATAGAGATAGAGATAACAGAGATCGTGAACGAAGAAACCGCGATAAAGAACGTGAAGAAGAGAATAAAGCTCGTGAACGTGCTCGATTGGATAAGCTTGCGGAGCGAGAACGTGAAAAGGAGCTTGAATCGATTAAGGAACAATACCTAGGTTCAAAAAAACCTAAAAAAAGGGTTATTAAACCTAGTGAGAAATTTCGATTTTCCTTTGATTGGGAAAATACTGAAGATACTTCGCGTGATATGAATGTTCTTTATCAAAACCCTCATGAAGCTCAGCTTCTTTTTGGCCGAGGGTTTAGAGCTGGAATGGATCGCCGTGAGCAGAAGAAGCTTGCGGCAAAGCATGAGAAAGAGATGAGGGATCAGATTAGGAAGAAGGATGGTGTGGAGGAGAAGCCTGAGGAGGCTGACGCTCAGCGGCGTAAGGAGGAGGCTGCTGATGCTTATGATACGTTTGATATGAGGGTTGATCGTCATTGGAGTGAGAAGAAGCTTGAGGAAATGACCGAGAGGGATTGGCGTATTTTTAGGGAAGATTATAACATTTCTTATAAGGGTTCTAAGATTCCAAGACCTATGAGAAGTTGGGTTGAGAGTAAGTTGAGTCAAGAGCTTTTGAAGGCTGTGGAGAAGGCTGGTTATAAAACCCCCTCTCCCATTCAGATGGCTGCTATTCCGCTTGGACTTCAGCAGCGCGATGTTATCGGCGTTGCTGAGACCGGTTCTGGGAAGACTGCTGCGTTTGTTTTGCCTATGTTGAGTTATATCACTAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCCGAGGGTCCTTATGCTGTTGTTATGGCGCCGACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACAGTTAAATTTGCTCAGTATATGGGGATTAAAGTTGTTTCCATTGTTGGTGGTCAGTCTATCGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCGACTCCTGGTCGTTTGATTGATTGCTTGGAGCGTCGCTATGCAGTTCTTAATCAGTGTAATTATGTTGTCCTTGATGAAGCTGATCGTATGATTGATATGGGGTTTGAGCCGCAGGTCATGGGTGTGCTAGATGCAATGCCTTCAAGTAATCTCAAACCGGAGAATGAAGATGAGGAGCTTGATGAGAAGAGGATTTATAGGACTACTTATATGTTCAGTGCTACCATGCCTCCTGCTGTGGAGCGGCTTGCTAGAAAGTATTTGAGGAACCCTGTTGTCGTGACTATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAAAATTATAAGCTTCAGAGATTGTTGGATGAGCTTAATGACAAGACTGCGATTGTGTTTGTCAACACCAAGAAGAGTGCTGATTTTCTTGCTAAGAATTTGGACAAGGAAGGCTATCGCGTGACCACTTTGCATGGAGGGAAATCACAGGATCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACCGATGTTGCTGGACGTGGTATTGACATTCCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATCGGGCGTACTGGCCGTGCAGGAAAGACGGGTGTGGCTACAACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGAACTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTAGGCGAAATGACACTGTTTTTGCCCATTAG 2139 0.4549 MKRPTDELATAIPKPVFLTKAQREQQALQRRHNQVAGHKRDQEELLLSTNNNNNNNRSSDPKPSDSDRRDRDRDRGHDRDSYRERDRDRDRDRERERDRDRDNRDRERRNRDKEREEENKARERARLDKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKHEKEMRDQIRKKDGVEEKPEEADAQRRKEEAADAYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKNYKLQRLLDELNDKTAIVFVNTKKSADFLAKNLDKEGYRVTTLHGGKSQDQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00041 712 MobiDBLite consensus disorder prediction 61 151 - -
Mepo1g00041 712 Gene3D - 253 522 IPR027417 -
Mepo1g00041 712 MobiDBLite consensus disorder prediction 687 712 - -
Mepo1g00041 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 689 IPR001650 -
Mepo1g00041 712 Coils Coil 97 140 - -
Mepo1g00041 712 MobiDBLite consensus disorder prediction 46 60 - -
Mepo1g00041 712 Gene3D - 523 710 IPR027417 -
Mepo1g00041 712 CDD SF2_C_DEAD 530 659 - -
Mepo1g00041 712 SMART ultradead3 311 533 IPR014001 -
Mepo1g00041 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 447 455 IPR000629 -
Mepo1g00041 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 671 IPR027417 -
Mepo1g00041 712 CDD DEADc_DDX23 303 519 - -
Mepo1g00041 712 MobiDBLite consensus disorder prediction 679 712 - -
Mepo1g00041 712 Pfam Helicase conserved C-terminal domain 545 650 IPR001650 -
Mepo1g00041 712 Pfam DEAD/DEAH box helicase 317 507 IPR011545 GO:0003676|GO:0005524
Mepo1g00041 712 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 232 689 - -
Mepo1g00041 712 Coils Coil 536 556 - -
Mepo1g00041 712 MobiDBLite consensus disorder prediction 1 155 - -
Mepo1g00041 712 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 292 320 IPR014014 GO:0003724
Mepo1g00041 712 Coils Coil 203 230 - -
Mepo1g00041 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 323 518 IPR014001 -
Mepo1g00041 712 FunFam probable ATP-dependent RNA helicase DDX23 253 522 - -
Mepo1g00041 712 MobiDBLite consensus disorder prediction 210 243 - -
Mepo1g00041 712 SMART helicmild6 569 650 IPR001650 -
Mepo1g00041 712 FunFam probable ATP-dependent RNA helicase DDX23 523 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00041 Mepo-Chr1 364085 366660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00041 299 699 Eukaryotic Initiation Factors Gene Family AT3G13920 32.921 4.98e-61 209