Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00017 ATGGAAGGAATGGCACAGCAACAGCAACAGCAGCAGCAGCAGCAGCACCCAGTACCTCGAACAGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCTGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCTCGATTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCTCAGACCAAGGGTGTGAAGATGTCTGCACCAGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGCGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG 801 0.4544 MEGMAQQQQQQQQQQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00017 266 FunFam PHD finger alfin-like protein 204 260 - -
Mepo1g00017 266 MobiDBLite consensus disorder prediction 1 20 - -
Mepo1g00017 266 CDD PHD_AL_plant 212 261 IPR044104 -
Mepo1g00017 266 MobiDBLite consensus disorder prediction 154 185 - -
Mepo1g00017 266 Pfam Alfin 21 147 IPR021998 GO:0006355|GO:0042393
Mepo1g00017 266 PANTHER CPG BINDING PROTEIN 19 264 IPR045104 GO:0006355|GO:0042393
Mepo1g00017 266 Pfam PHD-finger 212 259 IPR019787 -
Mepo1g00017 266 SMART PHD_3 211 259 IPR001965 -
Mepo1g00017 266 ProSitePatterns Zinc finger PHD-type signature. 212 258 IPR019786 -
Mepo1g00017 266 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g00017 266 SUPERFAMILY FYVE/PHD zinc finger 200 263 IPR011011 -
Mepo1g00017 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 259 IPR013083 -
Mepo1g00017 266 ProSiteProfiles Zinc finger PHD-type profile. 209 261 IPR019787 -
Mepo1g00017 266 MobiDBLite consensus disorder prediction 195 209 - -
Mepo1g00017 266 MobiDBLite consensus disorder prediction 154 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00017 Mepo-Chr1 169502 172881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00017 15 262 Alfin-like Transcription Factor Family AT1G14510 79.032 3.61e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo1g00017 Alfin 2.2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00017 K26274 - gmx:100807826 434.491