Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00016 ATGAGTGAATGTGGGAAGATGAATGATCCAAGCAGGCTTCACTTGAAGAAGGAACTGACTCAAATTCGAAAGGCTGCTCGTGTGTTGAGGGATCCCGGAACAACTTCTTCATGGAAATCAACCTCCAGATCTACTGCTACTGCAAACCCACTTCCTACTGCCACCAAACACAAAGACAACAACACTGTCTTCTTGTACAACTGGAACAACTACAACAAACAAGATCAAGAAGAAGAAGACAACCACTCTTCCTCTTCCCTTCTTGCAAGTTTAGAGGACAGTTTGAGTGATGCTCCTCACAACGGTGGCGGTGGTTTCGATTCAAAGACTGATGTTGCGACCCGCTCCTCCATTTTCAGAAATTCAAATCCCAGAAGTACAATCCCCAAGAAGCAAAAGCAAAAGCACAAGCACAAGAACAATATTAATAATAATAATAATAATAATCAGAAAAACCACCACCCTCTTATTACCAACAACGATGACTCCGGAGATGATTATTCTAACTCCATTTCCGGGGCTTCTTCTCTTCTTCGAAAACTCAATCACAACAACTTCCTCACTAGAACAAGTCTCAAAGATGATTCTTCTTATTCCTATAGTACCCCTGCATTGTCAACCACCTCTTTCAACAGGTACGCTCATCGCCGCCGCCGTTATCCTAGCACCGTTGGATCCTATGACGGCACAACAACCTCAGTTAATGACGTCGATGATGAGGATATTGATGATGACCGTTTGGATCTACCTGGTCGTCAAGGATGTGGGATTCCTTGTTATTGGTCAAAGAGGACTACCCCCAAACATAGTGGCAGCTGTTGTTCTCCTTCCTTCTCAGACACTTTAAGGAGGAAAGGTAGCAGCATTCTCTGTGGTACTCAATCTATATATTCAAGACACCACCGCAGATCCTCTTTTTCTGCTTTGCAGCCCCACAAGCGGAGAATGTCTTCCAGGAATGCTCGCGGCGCTAGAGGAGGAGGTGTTGTTCCTTTGCTTACTAGCACTAGCAGTGGTGATGTTAGACATTGTTCATCCTCTATTGGCATTGGTAGGAGTAGGACTGATGATGATGAGCTTTCTACTAACTTTGGTGAGCTTGATCTTGAGGGACTGAGCAGACTTGATGGAAGAAGATGGTCATCTAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTTCCTCTCAATGAGGATGAAGAAGGATCTTCCTCCGAAAACAGCAGGAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTCGGTGAACTCATTGGCCAGACTATTGTGGTTCACTCGCTCGTCAATGCCGTTTCCAGGGGCCGAATTGCTCCTGTCTATCTTTTTCAGGGTCCCCGTGGGACTGGCAAAACATCCACTGCCAGAATATTCGCTGCAGCCTTGAATTGTGTGGCTTCTGATGAAGGTAAGCCTTGTGGATATTGCGGGGAATGTGCTGATTTCGTTTCTGGCAAGAGCTGTGGTCTCGTCGAAGTCGATGGAACTAATAAGAAAGGAATCGATAAAGCTAGATATCTGCTAAAAAGATTGGCCGCCGGATATTCTTCGGCGGCCTCCTCGCGATATACGGTTTTTGTTATTGACGAGTGTCACTTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTTGAAGCACCACCTCAGAGAGTTGTGTTCATATTTATAACATCCGATCTTGACAATGTGCCGCGAACAATACAGTCTCGATGCCAGAAGTACATTTTCAATAAAATTAAAGATGGGGATATTGTAACAAGGTTAAGGAAAATATCTACTCAGGAGAATCTCAACGTTGAAACAGATGCACTGGACCTTATTGCCCTGAATGCAGACGGTTCACTACGAGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTAGAATTAGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGGTCCAGGGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATAGCTGGATCTTATGCGGTCGTTGATACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAACGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTTTGCAGCTTGGTTCCGTACCTTCTTCAGATGTTACTCAGTCAAGTAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGCTTCAAGAGACATTACTTCTTTCAAGCACAAGTTAGACCTCCAATATATGCCTCAAAAGTCAACACCCCCTGCTTCCTACCAAAAATCAGTAAACGGCAGTTCCAGGCTTCAAATTGATGGTTTCAGCTTGAATTCAAAGCCGTCAAATAGCCCAGTTATAGATGATGGATCCACAGTGGTCTCATCCGATGATCTTATTGCTGGGAATACAATGTTTAGATGCCTAGACTCGGGGAAGTTATGCGACATATGGTCATGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGGCAGCTGCTACACGATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGGCGATATTAAACTCAGGGTTGAAAGGTTTTTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCCGATGGTGAAGGTGAAAATCAGGTTAATCCGTCGGGTCTAAAGCAAGCCGCGTCAGCATTGGCAAGTGAGGACGAACAAAGGCGAGTTCATATGAATGGAGCTATGTCATATTCAAGTTTGCCTCAATCTGCCATGGGTTCCTCAGATATTCCAACTGAAGGAAATGGCGCGAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATAATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAAGCTGTAGAAAAAGGTTCCCCTGGATCGTTGAGTCGTTTGAGACCCGAGAAGAATCAAGTCCTGCCTCAGGATGGTGTCTATGGCATAAACCCAACGGAGTCCATGGAGTCAACAAGATTTTCCTCTCATCAGCATAGGGAAGATGACACAAATAGTGATCTTAAAATTTTGGCCCTTAAAAATGGAAGGGTCCTACCGAAGGATCAGATCGGTAAAAGAGCCGACAGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATATTGTCTGGAAAAGATAAACTGGATTGTGAATCTGGTTCAGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAACAAGTCCAAGACTAGAAGGGCAGTGAAGGTAAAAGGCACCCCAGTTGGAGGAGCGCGAAAAGTTGGGCGCTTTTCATTGTTTGGTGAGTGTGGTAAGCCAAAGAAAAAGGAGAGTAAAAGATAA 3561 0.4423 MSECGKMNDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSTSRSTATANPLPTATKHKDNNTVFLYNWNNYNKQDQEEEDNHSSSSLLASLEDSLSDAPHNGGGGFDSKTDVATRSSIFRNSNPRSTIPKKQKQKHKHKNNINNNNNNNQKNHHPLITNNDDSGDDYSNSISGASSLLRKLNHNNFLTRTSLKDDSSYSYSTPALSTTSFNRYAHRRRRYPSTVGSYDGTTTSVNDVDDEDIDDDRLDLPGRQGCGIPCYWSKRTTPKHSGSCCSPSFSDTLRRKGSSILCGTQSIYSRHHRRSSFSALQPHKRRMSSRNARGARGGGVVPLLTSTSSGDVRHCSSSIGIGRSRTDDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSSENSRSFSHKYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCGECADFVSGKSCGLVEVDGTNKKGIDKARYLLKRLAAGYSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSDLDNVPRTIQSRCQKYIFNKIKDGDIVTRLRKISTQENLNVETDALDLIALNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDVTQSSSSRRQSCKTTEDDPSSASRDITSFKHKLDLQYMPQKSTPPASYQKSVNGSSRLQIDGFSLNSKPSNSPVIDDGSTVVSSDDLIAGNTMFRCLDSGKLCDIWSCCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDGDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENQVNPSGLKQAASALASEDEQRRVHMNGAMSYSSLPQSAMGSSDIPTEGNGAKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYGINPTESMESTRFSSHQHREDDTNSDLKILALKNGRVLPKDQIGKRADSYPMSPSILHDSSLAILSGKDKLDCESGSGAGGCGFLCWNNKSKTRRAVKVKGTPVGGARKVGRFSLFGECGKPKKKESKR 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00016 1186 Pfam DNA polymerase III, delta subunit 425 585 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 983 1013 - -
Mepo1g00016 1186 Gene3D - 400 583 IPR027417 -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 110 128 - -
Mepo1g00016 1186 Coils Coil 718 748 - -
Mepo1g00016 1186 Gene3D - 587 648 - -
Mepo1g00016 1186 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 412 808 - -
Mepo1g00016 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 632 IPR027417 -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 305 320 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 777 791 - -
Mepo1g00016 1186 SUPERFAMILY post-AAA+ oligomerization domain-like 656 757 IPR008921 GO:0003677|GO:0006260
Mepo1g00016 1186 Pfam DNA polymerase III subunits gamma and tau domain III 639 757 IPR022754 GO:0003887
Mepo1g00016 1186 SMART AAA_5 441 592 IPR003593 GO:0016887
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 141 168 - -
Mepo1g00016 1186 CDD HLD_clamp_pol_III_gamma_tau 585 648 IPR045085 -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 28 57 - -
Mepo1g00016 1186 CDD AAA 423 582 - -
Mepo1g00016 1186 FunFam DNA polymerase III subunit gamma/tau 586 648 - -
Mepo1g00016 1186 NCBIfam DNA polymerase III subunit gamma/tau 409 759 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 302 348 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 94 168 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 331 348 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 33 57 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 223 242 - -
Mepo1g00016 1186 MobiDBLite consensus disorder prediction 763 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00016 Mepo-Chr1 156006 162496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00016 405 700 Core DNA Replication Machinery Family AT1G21690 24.430 3.85e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00016 - - gmx:100814391 1513.05