Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g00012 ATGGAACTTTCCAGCAGCCAAGATGGAGAAATCCCAATACCAATAAACCACAATAATAATAATAATAATTATGGTACTAATGGACATGGTCATCACATGATTCACCATCATCCTCATCCTCTTCCACTACACCACAACCACAACCACAGTAATATTATATCATCGTCTTCTTCAGCCGCAGTAGTGCCAGTACCAGTGGCAGTAGTACCCCAAAACCCTTCAGTTAATGGCACAACCACTCCTATGCAAGCAGCAGCTGTTAGTACTGGTGTGGAATTAGATCATGATCAGTCCTCCTACAAGAAATCGTCATCAGTTGTGGTAAGGTACAGAGAATGCTTAAAGAACCATGCAGCTGCAATGGGAGGGAATGCTACAGATGGCTGTGGTGAGTTCATGCCTAGTGGTGAACAAGGAACCATTGAAGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTCCAAGGTGAGACTGAGGATCAGGAAAACTACCACCATCATTCGGCCTTCAACTTCAACTTCAACAGGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTATTCCTGATCAGGCTCTTGGTCTTGGCTACCACCACCACCACTCTACTCCTAATACAGCATCAGCAGCAACAGGTAACAACAACAACAACAACATTCTTCCTTCTAGAGCTGTACCACCACCTCATGGACATGGCCACATCATCATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGAGGCAGCAGGTAGACTACATATGCATCATCATCAGCAGCAGCAGCAGGAGGTAGTGATGAAGAAAAGGTTCAGAACAAAATTCACACAGGAGCAGAAGGAGAAAATGTTCAACTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAGCAAGAGGAATCTGCGGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTCAAAGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAACTTCAACATGAACATACTGCTGCTAGTGCTAGTGCTAATCATCTCCCAACTCCATAA 1080 0.438 MELSSSQDGEIPIPINHNNNNNNYGTNGHGHHMIHHHPHPLPLHHNHNHSNIISSSSSAAVVPVPVAVVPQNPSVNGTTTPMQAAAVSTGVELDHDQSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVQGETEDQENYHHHSAFNFNFNRQHHHSMRKFMLPIPDQALGLGYHHHHSTPNTASAATGNNNNNNILPSRAVPPPHGHGHIIMPFNYNIPSESDEQEEAAGRLHMHHHQQQQQEVVMKKRFRTKFTQEQKEKMFNFAEKVGWKFQKQEESAVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQHEHTAASASANHLPTP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g00012 359 FunFam Zinc-finger homeodomain protein 2 265 339 - -
Mepo1g00012 359 MobiDBLite consensus disorder prediction 1 31 - -
Mepo1g00012 359 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 110 159 IPR006456 -
Mepo1g00012 359 Pfam ZF-HD protein dimerisation region 108 160 IPR006456 -
Mepo1g00012 359 NCBIfam homeobox domain, ZF-HD class 278 334 IPR006455 -
Mepo1g00012 359 Gene3D - 264 340 - -
Mepo1g00012 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 89 337 - -
Mepo1g00012 359 MobiDBLite consensus disorder prediction 1 28 - -
Mepo1g00012 359 SUPERFAMILY Homeodomain-like 273 339 IPR009057 -
Mepo1g00012 359 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 109 160 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g00012 Mepo-Chr1 97773 99059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g00012 98 340 ZF-HD Transcription Factor Family AT2G02540 47.773 2.38e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo1g00012 ZF-HD_dimer 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g00012 - - tpra:123910799 473.011