Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo16g00023 ATGAATTCTTGCCAACTAGTGATTCACACTCCATTTCGTTCTCTCACATTTCCATGCACAACAAAACCACCTCACCTCAACATTCATCTCTTCCTTTCCCTTCCTGCACCAACGCTCCTTTCCTCATCACTCAATCATGATTCCTTTTCCATCCCAAAATCATCTCAGTTTGGGTACACTCCTCCAGAGGATCTGTTTGGGCTAGAGGTGGAATTCAAGCCGAGAAAAGCTAACTCTCATACAAGAGAACCAAGGTCATGGTTTGGTCCAAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCCTGTACAGAATGTGGAATAGAACGATCTAGGTCAGACTGTCCAAAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAGTCGATTGATGAACGACCATGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGATGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTGAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCCACGCTTCAGGCACAGCGAGTGGCTGCTATTAAGAAAGCCAAGAGGACTGTTTCAGCAAGAAATCACGCTTCCAAAACTATGAAAGATTTCTTTAGTAATCCAATAAACCGTGAAAAAAGGAGCATGGCTATGCAAGGTGTGAAATTCTATTGTCAAAACTGTGGACGTGAAGGACATCGGAGACACTACTGTCCAGAACTGAAGGATGGTTTGATTGATCGGCGATTCACATGTAGGGTATGTGGTGAAAAAGGCCACAACAGAAGAACATGCAGTAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAGTATGGCCATAACCGAAGGACATGCCCTCAAGTTATTTCAAATAAAAGAATGGATATGACATCTCAGAGAGTATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATAGTAGGACATGTCCTAGTAGAATAGTTGGCACTGAACATTCTCTAGAATAA 1170 0.4197 MNSCQLVIHTPFRSLTFPCTTKPPHLNIHLFLSLPAPTLLSSSLNHDSFSIPKSSQFGYTPPEDLFGLEVEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKDDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPTLQAQRVAAIKKAKRTVSARNHASKTMKDFFSNPINREKRSMAMQGVKFYCQNCGREGHRRHYCPELKDGLIDRRFTCRVCGEKGHNRRTCSKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVISNKRMDMTSQRVYKCRLCQKEGHNSRTCPSRIVGTEHSLE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo16g00023 389 Gene3D - 327 384 - -
Mepo16g00023 389 SMART c2hcfinal6 300 316 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 SMART c2hcfinal6 363 379 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 SMART c2hcfinal6 331 347 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 SUPERFAMILY Retrovirus zinc finger-like domains 271 317 IPR036875 GO:0003676|GO:0008270
Mepo16g00023 389 ProSiteProfiles Zinc finger CCHC-type profile. 301 316 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
Mepo16g00023 389 SUPERFAMILY Retrovirus zinc finger-like domains 325 380 IPR036875 GO:0003676|GO:0008270
Mepo16g00023 389 Gene3D - 269 317 - -
Mepo16g00023 389 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 55 315 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo16g00023 56 387 C2H2 Transcription Factor Family AT5G20220 64.706 1.32e-158 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo16g00023 - - gmx:100800156 587.415